Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   GSF71_RS00940 Genome accession   NZ_CP048116
Coordinates   197286..199064 (-) Length   592 a.a.
NCBI ID   WP_016265206.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 192286..204064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS00920 - 193990..194460 (-) 471 WP_025015740.1 MarR family winged helix-turn-helix transcriptional regulator -
  GSF71_RS00925 - 194562..195401 (-) 840 WP_025015739.1 YitT family protein -
  GSF71_RS00930 - 195532..196560 (-) 1029 WP_035145850.1 SDR family oxidoreductase -
  GSF71_RS00935 - 196673..197242 (+) 570 WP_025015738.1 TetR/AcrR family transcriptional regulator -
  GSF71_RS00940 uvrC 197286..199064 (-) 1779 WP_016265206.1 excinuclease ABC subunit UvrC Machinery gene
  GSF71_RS00945 - 199144..199875 (-) 732 WP_016265207.1 amino acid ABC transporter ATP-binding protein -
  GSF71_RS00950 - 199868..201331 (-) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  GSF71_RS09955 - 201466..201618 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  GSF71_RS00955 - 201693..201986 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  GSF71_RS00960 yihA 201986..202585 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GSF71_RS00965 clpX 202732..203985 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67778.35 Da        Isoelectric Point: 9.6587

>NTDB_id=367225 GSF71_RS00940 WP_016265206.1 197286..199064(-) (uvrC) [Latilactobacillus sakei strain MBEL1397]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=367225 GSF71_RS00940 WP_016265206.1 197286..199064(-) (uvrC) [Latilactobacillus sakei strain MBEL1397]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCATATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTACGGCGCTGTCAGGGCCATCAAGGCCGCCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGTGCTTGTTTCCAGGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAACGGGCAAGTTGACAATGTTAAGAAGGATTTAACAGAGAAAATGGCGACGGCCGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGCCTCTTTCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AATGGTATAACCGTAAGAATAATGTGTTACCACGAGAAATTCTCGTGCCAGATGGCATCGAAAAACAAGTCTTATCCGAT
ATTTTGCAAGTACCGATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGTTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAATTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCATCGTCAGTTGC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATCTCGAAGACAGTTGCGCAAAC
CATTAAATTGTCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

Helix-hairpin-helix domain (HHH_5)

(542-592)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5

Multiple sequence alignment