Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   FDP16_RS06895 Genome accession   NZ_CP040798
Coordinates   1357638..1359029 (-) Length   463 a.a.
NCBI ID   WP_176799090.1    Uniprot ID   A0A7H8V1L6
Organism   Streptococcus sanguinis strain CGMH058     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1356361..1357466 1357638..1359029 flank 172


Gene organization within MGE regions


Location: 1356361..1359029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS06895 (FDP16_07180) ciaH 1357638..1359029 (-) 1392 WP_176799090.1 cell wall metabolism sensor histidine kinase WalK Regulator

Sequence


Protein


Download         Length: 463 a.a.        Molecular weight: 52511.80 Da        Isoelectric Point: 8.8401

>NTDB_id=367224 FDP16_RS06895 WP_176799090.1 1357638..1359029(-) (ciaH) [Streptococcus sanguinis strain CGMH058]
MLNKIKKTFYADDFSYFIRYFGLFTLIFSAMTLIIIQVMRSSLYTSVDENLKNLSNNPSSVADLAYRTTGQQSDPSNKVN
TKSPKSSKEPDGDPNEESKSDNLTTPNVSSNTFALLLDDNYKNISTSKSDGFLDFNSLDFNKSYLNQIKEIVIGNSFGQT
ESYRAYLFDIDPNNEYPDIKYAVVMTSISQLEQTSGKHEQLIVMVMVSFWGISLIASIYLARMSVKPLLESIQKQKAFVE
NASHELRTPLAVLQSRLETLFRKPEATIMQSSENIASSLDEVRNMRLLTTNLLNLARRDDGIKPQYGEVEPEFFDTTFAN
YCIIARENKKTFHSENMIKHPIVTDQILLKQLMTILFDNAIKYTDDDGEISVTAASSDRYLIFRVADNGPGISNEDKKKI
FDRFYRVDKARTRQKGGFGLGLSLAKQIVDAFKGTIYAKDNKPKGTVFEVKLLLKETKKRSVK

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=367224 FDP16_RS06895 WP_176799090.1 1357638..1359029(-) (ciaH) [Streptococcus sanguinis strain CGMH058]
ATGCTGAATAAAATCAAGAAGACCTTTTATGCGGATGATTTCTCTTATTTCATTCGCTATTTTGGGTTATTTACATTAAT
CTTCTCAGCCATGACCTTGATTATTATTCAGGTTATGCGTTCCAGCCTTTATACGTCAGTTGATGAAAATCTGAAAAACC
TGAGTAATAATCCTAGTTCGGTAGCAGATTTGGCCTATCGGACGACAGGTCAGCAGTCTGATCCTAGCAATAAGGTCAAC
ACTAAAAGTCCTAAAAGTAGTAAAGAGCCAGATGGCGATCCAAACGAAGAGTCTAAGTCTGACAATCTGACGACGCCAAA
TGTTAGTTCTAACACTTTCGCCCTGCTTTTGGATGATAATTATAAAAATATTTCCACTAGCAAGAGCGATGGCTTTCTGG
ACTTTAACTCGCTGGACTTTAACAAGTCCTATCTGAATCAGATCAAGGAAATTGTAATTGGCAACAGCTTTGGCCAGACA
GAAAGCTATCGGGCTTATCTCTTTGATATTGACCCCAATAATGAATATCCAGATATTAAGTACGCTGTGGTCATGACTAG
CATCAGCCAGCTGGAGCAAACTAGCGGCAAGCATGAGCAGTTGATTGTCATGGTTATGGTCAGCTTTTGGGGTATTTCCC
TGATTGCCAGTATTTATCTGGCTCGGATGAGTGTTAAGCCCTTGCTGGAAAGTATCCAGAAGCAGAAGGCTTTCGTGGAA
AATGCCAGTCATGAACTGCGGACACCTTTGGCTGTTTTGCAGAGCCGCTTAGAAACGCTCTTTCGTAAGCCTGAAGCAAC
AATTATGCAGAGCAGTGAAAATATCGCTTCTAGCTTGGATGAAGTACGCAATATGCGTTTGCTGACGACCAATCTTCTCA
ATCTGGCTCGTCGTGATGATGGTATCAAGCCCCAATATGGTGAAGTCGAACCGGAATTTTTTGATACGACCTTTGCTAAT
TACTGCATTATCGCAAGGGAGAATAAAAAAACTTTTCATTCGGAAAATATGATCAAGCACCCTATTGTGACAGATCAAAT
TTTGCTCAAGCAGCTGATGACCATCCTGTTTGACAATGCTATCAAGTACACAGATGATGACGGCGAAATCAGTGTCACGG
CTGCTTCAAGCGATCGTTATCTCATCTTTCGGGTAGCAGATAATGGACCTGGTATCAGCAACGAAGATAAGAAGAAGATT
TTTGATCGCTTTTATCGGGTTGACAAGGCTCGGACCCGTCAGAAAGGTGGCTTTGGTCTGGGGCTTTCTCTGGCCAAGCA
GATTGTCGATGCTTTCAAGGGCACTATTTATGCCAAGGACAACAAACCAAAAGGTACGGTCTTTGAAGTTAAACTGCTAC
TGAAGGAAACGAAAAAGCGCTCTGTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7H8V1L6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

61.171

99.568

0.609

  ciaH Streptococcus pneumoniae D39

61.171

99.568

0.609

  ciaH Streptococcus pneumoniae R6

61.171

99.568

0.609

  ciaH Streptococcus pneumoniae TIGR4

61.171

99.568

0.609

  ciaH Streptococcus mutans UA159

52.851

98.488

0.521


Multiple sequence alignment