Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GSF71_RS00500 Genome accession   NZ_CP048116
Coordinates   100579..101637 (+) Length   352 a.a.
NCBI ID   WP_025015780.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95579..106637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS00475 - 95872..96372 (-) 501 WP_025015782.1 DUF1836 domain-containing protein -
  GSF71_RS00480 trhA 96533..97171 (+) 639 WP_016265118.1 PAQR family membrane homeostasis protein TrhA -
  GSF71_RS00485 - 97200..98042 (+) 843 WP_011374666.1 DegV family protein -
  GSF71_RS00490 - 98168..98749 (+) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  GSF71_RS00495 - 98751..99758 (+) 1008 WP_025015781.1 NADP-dependent oxidoreductase -
  GSF71_RS00500 xerS 100579..101637 (+) 1059 WP_025015780.1 tyrosine recombinase XerS Machinery gene
  GSF71_RS00505 thiT 101851..102453 (+) 603 WP_025015779.1 energy-coupled thiamine transporter ThiT -
  GSF71_RS00510 - 102493..104286 (-) 1794 WP_162101000.1 heavy metal translocating P-type ATPase -
  GSF71_RS00515 - 104387..104740 (-) 354 WP_025015777.1 hypothetical protein -
  GSF71_RS00520 - 104797..105720 (-) 924 WP_162100792.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40719.63 Da        Isoelectric Point: 9.1623

>NTDB_id=367220 GSF71_RS00500 WP_025015780.1 100579..101637(+) (xerS) [Latilactobacillus sakei strain MBEL1397]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=367220 GSF71_RS00500 WP_025015780.1 100579..101637(+) (xerS) [Latilactobacillus sakei strain MBEL1397]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.067

100

0.466

Multiple sequence alignment