Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   FE254_RS10230 Genome accession   NZ_CP040349
Coordinates   2231783..2232106 (+) Length   107 a.a.
NCBI ID   WP_090430758.1    Uniprot ID   A0A1H0W397
Organism   Pseudomonas guguanensis strain HMFL31     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226783..2237106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE254_RS10210 (FE254_10260) - 2227122..2228084 (+) 963 WP_273258527.1 SDR family oxidoreductase -
  FE254_RS10215 (FE254_10265) - 2228081..2229097 (+) 1017 WP_273258525.1 glycosyltransferase family 4 protein -
  FE254_RS10220 (FE254_10270) - 2229094..2229684 (+) 591 WP_273258523.1 acetyltransferase -
  FE254_RS10225 (FE254_10275) - 2229694..2231694 (+) 2001 WP_273258521.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  FE254_RS10230 (FE254_10280) comEA/comE1 2231783..2232106 (+) 324 WP_090430758.1 helix-hairpin-helix domain-containing protein Machinery gene
  FE254_RS10240 (FE254_10290) - 2232824..2234020 (-) 1197 WP_286587101.1 amino acid aminotransferase -
  FE254_RS10245 (FE254_10295) uvrB 2234266..2236281 (+) 2016 WP_273253771.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11144.69 Da        Isoelectric Point: 5.8316

>NTDB_id=363554 FE254_RS10230 WP_090430758.1 2231783..2232106(+) (comEA/comE1) [Pseudomonas guguanensis strain HMFL31]
MLKNRLSSLLFAVLASLSLAATAAEPPKTESAKPAAVQAAQVATVNLNTADAATLQRELAGIGATKAQAIVAYREEHGDF
ASVDELLEVKGIGQATLEKNRDKLSVN

Nucleotide


Download         Length: 324 bp        

>NTDB_id=363554 FE254_RS10230 WP_090430758.1 2231783..2232106(+) (comEA/comE1) [Pseudomonas guguanensis strain HMFL31]
ATGCTGAAAAATCGTCTCTCCTCTCTGCTGTTCGCCGTTCTCGCTTCCCTCTCTCTGGCTGCCACCGCAGCCGAGCCTCC
GAAAACCGAAAGTGCCAAGCCTGCAGCTGTCCAGGCTGCGCAGGTTGCCACCGTCAATCTGAATACTGCTGATGCAGCGA
CCCTGCAGAGGGAGTTGGCAGGTATCGGTGCGACCAAGGCGCAGGCGATTGTTGCCTACCGTGAAGAGCACGGTGACTTC
GCTTCGGTTGACGAGCTGCTGGAGGTGAAGGGTATTGGTCAGGCGACGCTGGAGAAGAACCGCGACAAGTTGAGCGTGAA
CTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0W397

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.182

100

0.495
  comEA Vibrio cholerae strain A1552

45

93.458

0.421
  comEA Vibrio cholerae C6706

45

93.458

0.421
  comEA Legionella pneumophila str. Paris

41.748

96.262

0.402
  comEA Legionella pneumophila strain ERS1305867

41.748

96.262

0.402
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

90.654

0.402
  comEA Vibrio campbellii strain DS40M4

42.268

90.654

0.383

Multiple sequence alignment