Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SMI_RS01680 Genome accession   NC_013853
Coordinates   316528..318507 (+) Length   659 a.a.
NCBI ID   WP_000749702.1    Uniprot ID   D3H6V1
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 311528..323507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS01650 - 311812..312042 (+) 231 WP_000250385.1 DUF1146 family protein -
  SMI_RS01655 (smi_0317) murA 312065..313348 (+) 1284 WP_000411895.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SMI_RS01660 (smi_0318) - 313341..313529 (+) 189 WP_164925506.1 DNA-directed RNA polymerase subunit beta -
  SMI_RS01665 (smi_0319) endA 313568..314398 (+) 831 WP_001036774.1 DNA-entry nuclease EndA Machinery gene
  SMI_RS01670 (smi_0320) - 314660..315991 (+) 1332 WP_000390035.1 hemolysin family protein -
  SMI_RS01680 (smi_0322) amiA 316528..318507 (+) 1980 WP_000749702.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS01685 (smi_0323) amiC 318574..320070 (+) 1497 WP_000759913.1 ABC transporter permease Regulator
  SMI_RS01690 (smi_0324) amiD 320070..320996 (+) 927 WP_000103704.1 oligopeptide ABC transporter permease OppC Regulator
  SMI_RS01695 (smi_0325) amiE 321005..322072 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMI_RS01700 (smi_0326) amiF 322083..323009 (+) 927 WP_001291304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73061.23 Da        Isoelectric Point: 4.8883

>NTDB_id=36297 SMI_RS01680 WP_000749702.1 316528..318507(+) (amiA) [Streptococcus mitis B6]
MKKSRVFIAAGVALFATGLLVACGNSKSSDSTAPKTYGYVYSADPETLDYLISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=36297 SMI_RS01680 WP_000749702.1 316528..318507(+) (amiA) [Streptococcus mitis B6]
ATGAAAAAAAGTAGAGTATTTATTGCAGCAGGAGTTGCTTTGTTTGCGACGGGTTTGTTAGTGGCTTGTGGGAATTCAAA
ATCATCGGATTCGACAGCTCCAAAGACCTATGGCTATGTCTATTCAGCTGATCCAGAAACATTGGACTATCTTATCTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATATGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAGGACGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCTGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTCAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAGCGTAACTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCATCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATCGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATGTTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3H6V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681
  amiA3 Streptococcus thermophilus LMD-9

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.424

100

0.675

Multiple sequence alignment