Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SMI_RS01690 Genome accession   NC_013853
Coordinates   320070..320996 (+) Length   308 a.a.
NCBI ID   WP_000103704.1    Uniprot ID   D3H6V3
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 315070..325996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS01680 (smi_0322) amiA 316528..318507 (+) 1980 WP_000749702.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS01685 (smi_0323) amiC 318574..320070 (+) 1497 WP_000759913.1 ABC transporter permease Regulator
  SMI_RS01690 (smi_0324) amiD 320070..320996 (+) 927 WP_000103704.1 oligopeptide ABC transporter permease OppC Regulator
  SMI_RS01695 (smi_0325) amiE 321005..322072 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMI_RS01700 (smi_0326) amiF 322083..323009 (+) 927 WP_001291304.1 ATP-binding cassette domain-containing protein Regulator
  SMI_RS01705 (smi_0327) - 323463..324440 (+) 978 WP_000869841.1 ABC transporter substrate-binding protein -
  SMI_RS01710 (smi_0328) - 324452..325345 (+) 894 WP_001012080.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34640.74 Da        Isoelectric Point: 9.8044

>NTDB_id=36299 SMI_RS01690 WP_000103704.1 320070..320996(+) (amiD) [Streptococcus mitis B6]
MSTIDKEKFQFVKRDDFASEVIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=36299 SMI_RS01690 WP_000103704.1 320070..320996(+) (amiD) [Streptococcus mitis B6]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAGTCATTGATGCGCCAGCATA
TTCTTACTGGAAGTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAATGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTATAACGTCATCTCAAATATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTAACGACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACTCCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACACAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCAATCACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3H6V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment