Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMI_RS01700 Genome accession   NC_013853
Coordinates   322083..323009 (+) Length   308 a.a.
NCBI ID   WP_001291304.1    Uniprot ID   D3H6V5
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 317083..328009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS01685 (smi_0323) amiC 318574..320070 (+) 1497 WP_000759913.1 ABC transporter permease Regulator
  SMI_RS01690 (smi_0324) amiD 320070..320996 (+) 927 WP_000103704.1 oligopeptide ABC transporter permease OppC Regulator
  SMI_RS01695 (smi_0325) amiE 321005..322072 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMI_RS01700 (smi_0326) amiF 322083..323009 (+) 927 WP_001291304.1 ATP-binding cassette domain-containing protein Regulator
  SMI_RS01705 (smi_0327) - 323463..324440 (+) 978 WP_000869841.1 ABC transporter substrate-binding protein -
  SMI_RS01710 (smi_0328) - 324452..325345 (+) 894 WP_001012080.1 ABC transporter permease -
  SMI_RS01715 (smi_0329) - 325358..326161 (+) 804 WP_000157662.1 ABC transporter ATP-binding protein -
  SMI_RS01720 (smi_0330) - 326182..326331 (+) 150 Protein_312 alpha,alpha-phosphotrehalase -
  SMI_RS01725 (smi_0331) - 326473..326721 (+) 249 WP_000364990.1 YneF family protein -
  SMI_RS01730 (smi_0332) racE 326925..327719 (+) 795 WP_000370370.1 glutamate racemase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34821.86 Da        Isoelectric Point: 6.5107

>NTDB_id=36301 SMI_RS01700 WP_001291304.1 322083..323009(+) (amiF) [Streptococcus mitis B6]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELTRYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=36301 SMI_RS01700 WP_001291304.1 322083..323009(+) (amiF) [Streptococcus mitis B6]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTTGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CGATAATCGGTCTCAATGATACAAGTAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTTCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTTCGTGC
CCAAGTCTTGAACTTACTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTTATCGCCCATGATTTGTCTGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTATAAGGGTGTTATTGTAGAAGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGACCCAATCTTGGAACGCAAGAAAGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCCATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGACGCGTTACCAAAAAGGATTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3H6V5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment