Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   THTHE16_RS06270 Genome accession   NC_017272
Coordinates   1183972..1184445 (+) Length   157 a.a.
NCBI ID   WP_014510471.1    Uniprot ID   -
Organism   Thermus thermophilus SG0.5JP17-16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178972..1189445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS06250 (Ththe16_1226) ilvN 1179955..1180467 (-) 513 WP_041444882.1 acetolactate synthase small subunit -
  THTHE16_RS06255 (Ththe16_1227) ilvB 1180464..1182152 (-) 1689 WP_014510469.1 biosynthetic-type acetolactate synthase large subunit -
  THTHE16_RS06260 (Ththe16_1228) - 1182308..1183288 (-) 981 WP_008631297.1 YpdA family putative bacillithiol disulfide reductase -
  THTHE16_RS06265 (Ththe16_1229) pilA/pilA1 1183446..1183916 (+) 471 WP_014510470.1 GspH/FimT family protein Machinery gene
  THTHE16_RS06270 (Ththe16_1230) pilA/pilA1 1183972..1184445 (+) 474 WP_014510471.1 GspH/FimT family pseudopilin Machinery gene
  THTHE16_RS06275 (Ththe16_1231) pilA/pilA2 1184442..1184999 (+) 558 WP_014510472.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  THTHE16_RS06280 (Ththe16_1232) pilA/pilA3 1184996..1185700 (+) 705 WP_014510473.1 PilW family protein Machinery gene
  THTHE16_RS06285 (Ththe16_1233) comZ 1185711..1187426 (+) 1716 WP_014510474.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  THTHE16_RS12275 (Ththe16_1234) - 1187666..1188073 (+) 408 WP_014510475.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  THTHE16_RS06295 (Ththe16_1235) - 1188242..1188439 (+) 198 WP_018461701.1 nucleotidyltransferase family protein -
  THTHE16_RS06300 (Ththe16_1236) - 1188610..1189089 (+) 480 WP_014510476.1 DUF1640 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16720.06 Da        Isoelectric Point: 11.1831

>NTDB_id=36296 THTHE16_RS06270 WP_014510471.1 1183972..1184445(+) (pilA/pilA1) [Thermus thermophilus SG0.5JP17-16]
MRLPRGFTLVELLILLTILGVLLTLGMGYLRSDRLAVNQAAQSLAAQITRARLEAIRRNAFVGLQFSTAGAGGYTLFVDA
NRNGSYDTGDTAIQSITFGQGDWGQVRLQSVSGASTLVFDPRGIAQALNATTVTLSNRAGTYSKQVQISPQGRASVQ

Nucleotide


Download         Length: 474 bp        

>NTDB_id=36296 THTHE16_RS06270 WP_014510471.1 1183972..1184445(+) (pilA/pilA1) [Thermus thermophilus SG0.5JP17-16]
ATGCGACTCCCCCGCGGCTTCACCCTGGTAGAGCTCCTCATCCTCCTAACCATTCTGGGGGTCCTCCTCACCCTAGGCAT
GGGCTACCTCCGCTCCGACCGCCTGGCCGTCAACCAAGCGGCCCAAAGCCTGGCGGCCCAAATCACCCGGGCCCGCCTGG
AAGCCATCCGCCGCAACGCCTTCGTGGGCCTCCAGTTTTCCACGGCGGGGGCCGGCGGCTACACCCTCTTTGTGGACGCC
AACCGCAACGGGAGCTACGACACGGGCGATACCGCCATCCAAAGCATCACCTTCGGCCAGGGCGACTGGGGGCAGGTGCG
GCTGCAAAGCGTTAGCGGGGCCAGCACCTTGGTCTTTGACCCCCGGGGCATCGCCCAAGCCCTCAACGCTACCACGGTGA
CCCTGAGCAACCGGGCCGGCACCTATAGCAAGCAGGTCCAGATTAGCCCACAAGGGAGGGCGAGCGTCCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(40-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

55.385

82.803

0.459

Multiple sequence alignment