Detailed information NTG0036282

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: THTHE16_RS02120
• Genome accession: NC_017272
• Coordinates: 385836..386810 (-)
• Length: 324 a.a.
• NCBI ID: WP_014509911.1
• Uniprot ID: -
• Organism: Thermus thermophilus SG0.5JP17-16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 380836..391810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
THTHE16_RS02100 (Ththe16_0401)	-	381092..381520 (+)	429	WP_008631632.1	hypothetical protein	-
THTHE16_RS02105 (Ththe16_0402)	ftsH	381506..383362 (-)	1857	WP_014509909.1	ATP-dependent zinc metalloprotease FtsH	-
THTHE16_RS02110 (Ththe16_0403)	-	383435..384787 (+)	1353	WP_008631640.1	tetratricopeptide repeat protein	-
THTHE16_RS02115 (Ththe16_0404)	-	384808..385839 (-)	1032	WP_014509910.1	DUF4388 domain-containing protein	-
THTHE16_RS02120 (Ththe16_0405)	ruvB	385836..386810 (-)	975	WP_014509911.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
THTHE16_RS02125 (Ththe16_0406)	panB	386836..387621 (+)	786	WP_008631646.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
THTHE16_RS02130 (Ththe16_0407)	-	387669..388595 (+)	927	WP_008631648.1	RluA family pseudouridine synthase	-
THTHE16_RS02135 (Ththe16_0408)	-	388592..389485 (+)	894	WP_008631649.1	DNA-methyltransferase	-
THTHE16_RS02140 (Ththe16_0409)	-	389637..390137 (+)	501	WP_008631651.1	hypothetical protein	-
THTHE16_RS02145 (Ththe16_0410)	lysN	390123..391316 (-)	1194	WP_014509913.1	2-aminoadipate transaminase	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 36032.77 Da
• Isoelectric Point: 6.5154

>NTDB_id=36282 THTHE16_RS02120 WP_014509911.1 385836..386810(-) (ruvB) [Thermus thermophilus SG0.5JP17-16]
MEDLTLRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLRSRFG
IVEHLEYYTPEELAQGVMRDARLLGARITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEIITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=36282 THTHE16_RS02120 WP_014509911.1 385836..386810(-) (ruvB) [Thermus thermophilus SG0.5JP17-16]
GTGGAAGACCTCACCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTCTA
CCTCGAGGCGGCCAAGGCCCGAAAAGAACCCTTAGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTTGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCTGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAAGGCCCGGCGGCGAGGACCATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGGCCCGGCCTGATCACCGCGCCCTTAAGGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAGGGGGTGATGCGGGACGCCCGCCTCCTCGGGGCAAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAAATCATCACCCGGGAAAGGGCCCTGGAGGCCCTTGCGGCCCTGGGCTTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGTGGCCCAGTGGGCCT
CGCCACCCTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAAGAGGTGCACGAACCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACCCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTATCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB AAA lid domain (AAA_lid_4) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	57.097	95.679	0.546
ruvB	Streptococcus pneumoniae R6	57.097	95.679	0.546
ruvB	Streptococcus pneumoniae D39	57.097	95.679	0.546
ruvB	Synechocystis sp. PCC 6803	50.779	99.074	0.503
ruvB	Helicobacter pylori 26695	50.955	96.914	0.494