Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BJ6T_RS05875 Genome accession   NC_017249
Coordinates   1289232..1289834 (+) Length   200 a.a.
NCBI ID   WP_014491379.1    Uniprot ID   A0ABV2RKC3
Organism   Bradyrhizobium japonicum USDA 6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284232..1294834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJ6T_RS05855 (BJ6T_12020) - 1284921..1285562 (-) 642 WP_014491375.1 HD domain-containing protein -
  BJ6T_RS05860 - 1285666..1286669 (+) 1004 Protein_1185 GlxA family transcriptional regulator -
  BJ6T_RS05865 (BJ6T_12040) - 1286967..1288787 (+) 1821 WP_014491377.1 DNA polymerase III subunit gamma/tau -
  BJ6T_RS05870 (BJ6T_12050) - 1288910..1289230 (+) 321 WP_014491378.1 YbaB/EbfC family nucleoid-associated protein -
  BJ6T_RS05875 (BJ6T_12060) recR 1289232..1289834 (+) 603 WP_014491379.1 recombination mediator RecR Machinery gene
  BJ6T_RS05880 (BJ6T_12070) - 1289861..1290298 (+) 438 WP_014491380.1 hypothetical protein -
  BJ6T_RS05885 (BJ6T_12080) - 1290415..1291779 (-) 1365 WP_014491381.1 MFS transporter -
  BJ6T_RS05890 (BJ6T_12090) rmuC 1291971..1293170 (-) 1200 WP_014491382.1 DNA recombination protein RmuC -
  BJ6T_RS05895 (BJ6T_12100) def 1293342..1293866 (+) 525 WP_014491383.1 peptide deformylase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21352.67 Da        Isoelectric Point: 6.4836

>NTDB_id=36221 BJ6T_RS05875 WP_014491379.1 1289232..1289834(+) (recR) [Bradyrhizobium japonicum USDA 6]
MGSVAGPEIERLVQLLARLPGLGPRSARRAALHLIKKREALMMPLSSALQVALDKVQVCKTCGNIDTQNPCTVCTDPKRD
PAIIVVVADVADLWALERANATQGRYHVLGATLSPLDGVGPQDLTIDALVARAHAAEVHEIILALNATVDGQTTAHYITD
LLQDANVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=36221 BJ6T_RS05875 WP_014491379.1 1289232..1289834(+) (recR) [Bradyrhizobium japonicum USDA 6]
ATGGGTTCGGTTGCAGGTCCCGAAATCGAGCGGCTGGTCCAGCTTCTCGCACGGCTGCCGGGCTTGGGCCCGCGCTCCGC
GCGGCGTGCGGCGCTGCATCTGATCAAGAAGCGCGAAGCGCTGATGATGCCGCTGTCTTCGGCGCTGCAGGTCGCGCTCG
ACAAGGTCCAGGTCTGCAAGACCTGCGGCAACATCGACACGCAAAATCCCTGCACCGTCTGCACCGATCCGAAGCGCGAT
CCCGCAATCATCGTCGTGGTCGCCGATGTCGCCGACCTCTGGGCGCTGGAGCGGGCCAATGCGACCCAGGGCCGCTATCA
CGTGCTGGGCGCGACCTTGTCGCCGCTCGACGGCGTCGGCCCGCAGGATCTCACCATCGACGCGCTGGTCGCGCGCGCGC
ATGCTGCCGAGGTGCATGAGATCATCCTGGCGCTGAACGCGACGGTCGACGGCCAGACCACGGCGCACTACATCACCGAC
CTGCTTCAGGACGCCAACGTAAAAGTAACCCGGCTGGCCCATGGTGTGCCGGTCGGTGGCGAGCTTGATTATCTCGACGA
AGGTACGCTATCGGCCGCCATGCGGCAGCGGACCCTGTTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(44-80)

Toprim domain (Toprim_4)

(83-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

95.5

0.42
  recR Bacillus subtilis subsp. subtilis str. 168

41.667

96

0.4
  recR Streptococcus pneumoniae R6

38.421

95

0.365

Multiple sequence alignment