Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FCN78_RS01245 Genome accession   NZ_CP040021
Coordinates   265087..266832 (+) Length   581 a.a.
NCBI ID   WP_201258655.1    Uniprot ID   A0AB36JY69
Organism   Salinivibrio kushneri strain AL184     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260087..271832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN78_RS01225 (FCN78_01225) - 262490..263386 (+) 897 WP_077659173.1 hypothetical protein -
  FCN78_RS01230 (FCN78_01230) - 263383..263964 (+) 582 WP_077458671.1 PilN domain-containing protein -
  FCN78_RS01235 (FCN78_01235) - 263961..264542 (+) 582 WP_158014693.1 type 4a pilus biogenesis protein PilO -
  FCN78_RS01240 (FCN78_01240) - 264563..265090 (+) 528 WP_158014695.1 pilus assembly protein PilP -
  FCN78_RS01245 (FCN78_01245) pilQ 265087..266832 (+) 1746 WP_201258655.1 type IV pilus secretin PilQ Machinery gene
  FCN78_RS01250 (FCN78_01250) aroK 266977..267495 (+) 519 WP_025739049.1 shikimate kinase AroK -
  FCN78_RS01255 (FCN78_01255) aroB 267515..268594 (+) 1080 WP_069361857.1 3-dehydroquinate synthase -
  FCN78_RS01260 (FCN78_01260) - 268606..270231 (+) 1626 WP_077599497.1 AAA family ATPase -
  FCN78_RS01265 (FCN78_01265) dam 270304..271134 (+) 831 WP_077485800.1 adenine-specific DNA-methyltransferase -
  FCN78_RS01270 (FCN78_01270) - 271156..271344 (-) 189 WP_069361854.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62744.24 Da        Isoelectric Point: 5.2624

>NTDB_id=361668 FCN78_RS01245 WP_201258655.1 265087..266832(+) (pilQ) [Salinivibrio kushneri strain AL184]
MKASRVKRTLGSGLAQAVIVTIFVCGMVWSTVVGAAEAVTLVQAQLTSPTPKETQISLRFDSASVMADFRQLSPKQLMIR
LPQVVVKPDLLGRMKGQETGLPVNAVHITQVAGYTKIEIDAQQAMTFDYQQQHQQLIITLRDADPATAQAPDPDAPISIN
FQDIPVRAVLQLIAEQNQFNLVTTDSVQGNITMRIDGVPWQDVLDVILRVKGLDKRQRGDVMLVAPRKELMAQEKQDLEM
AQQADALLPLSSAVITVNYAKAADVAALIRGQGQGVSLLSPRGAVSLDSRTNAIIIRDIEKNIDRIRTLVSHLDVPVKQV
EIEARIVTVEQGSVDELGVRWGLLNRNGSTTVGPSVEGNLMWDSNVTGQGPESLNDAATDGVNMGDFLNVNLAAASPSAS
SMAMQVAKLGNDLLLDLELSALESERKAEVVSSPRLITTNKKAAYIEQGTELPYLEASSSGAVAVSFKKAVLSLSVTPQI
TPNNTLVLDLKLTQDMPEKAVVAGKGEAMSISTKRINTQVLAENGETVVLGGIFQQTMINKETQVPLLGDIPLVGNLFKH
QLKDHAKRELLIFVTPKIVTD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=361668 FCN78_RS01245 WP_201258655.1 265087..266832(+) (pilQ) [Salinivibrio kushneri strain AL184]
ATGAAAGCAAGCAGGGTAAAACGCACACTCGGATCAGGACTAGCGCAAGCTGTCATTGTGACTATTTTCGTTTGTGGGAT
GGTATGGAGTACCGTTGTGGGGGCCGCTGAGGCAGTGACTTTAGTGCAGGCGCAACTTACGTCTCCCACGCCGAAAGAGA
CGCAGATCAGCTTGCGTTTTGACAGTGCCTCGGTGATGGCGGACTTTCGCCAGTTGAGCCCTAAGCAGCTTATGATTCGA
TTACCTCAGGTGGTCGTCAAGCCAGACTTACTTGGGCGGATGAAAGGGCAAGAGACGGGGTTGCCTGTGAACGCCGTTCA
CATCACCCAGGTCGCAGGCTACACCAAGATAGAAATTGATGCCCAGCAAGCGATGACGTTTGATTACCAACAACAGCATC
AGCAATTAATTATCACCTTGCGCGACGCTGATCCGGCGACCGCCCAAGCCCCTGATCCCGATGCACCGATTTCCATCAAT
TTCCAAGATATTCCTGTGCGGGCGGTGTTACAACTGATTGCCGAGCAAAATCAATTTAATTTGGTGACCACTGACAGTGT
GCAGGGCAATATCACCATGCGTATCGACGGAGTACCCTGGCAAGATGTGCTGGATGTGATTCTCAGGGTCAAGGGGTTAG
ACAAGCGCCAACGAGGGGATGTGATGTTAGTGGCCCCTCGTAAAGAACTGATGGCGCAAGAAAAACAAGATCTCGAGATG
GCGCAACAAGCAGACGCGCTGTTGCCTTTGTCTTCTGCCGTGATCACCGTTAACTACGCCAAAGCCGCTGACGTTGCGGC
ATTAATCCGAGGCCAGGGGCAGGGAGTCAGCTTGCTGTCTCCTCGTGGTGCCGTCTCACTCGATTCGCGCACCAATGCGA
TCATCATTCGTGATATCGAGAAGAACATCGATCGTATTCGCACGTTAGTGAGTCATTTAGATGTGCCGGTCAAGCAAGTC
GAGATAGAGGCACGTATTGTGACTGTTGAGCAAGGCTCAGTGGATGAACTCGGTGTGCGCTGGGGGCTATTGAACCGAAA
TGGCTCAACCACGGTTGGTCCGTCTGTGGAAGGTAACTTGATGTGGGATAGCAATGTGACGGGGCAAGGGCCTGAAAGCT
TAAACGACGCGGCGACAGACGGCGTAAATATGGGGGACTTTCTCAATGTGAACCTCGCGGCTGCGAGCCCTTCCGCCTCA
AGCATGGCGATGCAAGTGGCGAAGCTCGGCAATGACCTTCTACTCGATTTGGAGCTGTCGGCACTTGAAAGTGAAAGGAA
AGCAGAAGTGGTATCTAGCCCTCGTCTGATCACCACCAATAAAAAAGCGGCCTACATTGAACAAGGGACAGAGCTGCCTT
ACCTCGAGGCGTCTTCAAGCGGTGCGGTAGCGGTGTCGTTTAAAAAAGCGGTGTTGAGCTTATCGGTGACCCCACAAATT
ACGCCCAACAATACGCTGGTCTTGGATTTAAAGTTAACCCAAGATATGCCCGAAAAAGCGGTGGTGGCCGGAAAAGGCGA
AGCGATGTCGATCAGTACCAAGCGCATTAATACCCAAGTGTTGGCGGAAAATGGTGAAACCGTGGTCTTAGGGGGGATCT
TTCAGCAAACCATGATCAACAAAGAGACCCAAGTGCCGCTGTTGGGGGATATTCCGTTGGTTGGTAACCTGTTTAAGCAC
CAGTTAAAAGACCATGCAAAACGTGAACTTCTGATCTTTGTGACCCCTAAAATCGTCACAGACTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(421-579)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

49.147

100

0.496
  pilQ Vibrio cholerae strain A1552

49.147

100

0.496
  pilQ Vibrio campbellii strain DS40M4

51.805

95.353

0.494
  comQ Acinetobacter baylyi ADP1

39.777

92.599

0.368
  pilQ Acinetobacter baumannii strain A118

38.225

95.009

0.363
  pilQ Acinetobacter baumannii D1279779

38.225

95.009

0.363

Multiple sequence alignment