Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FAY30_RS25815 Genome accession   NZ_CP039727
Coordinates   5416968..5417495 (-) Length   175 a.a.
NCBI ID   WP_149872520.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5411968..5422495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS25795 (FAY30_25795) rplI 5413086..5413535 (-) 450 WP_149872517.1 50S ribosomal protein L9 -
  FAY30_RS25800 (FAY30_25800) - 5413532..5415505 (-) 1974 WP_149872518.1 DHH family phosphoesterase -
  FAY30_RS25805 (FAY30_25805) - 5415531..5416475 (-) 945 WP_149872519.1 YybS family protein -
  FAY30_RS25810 (FAY30_25810) rpsR 5416679..5416918 (-) 240 WP_007088219.1 30S ribosomal protein S18 -
  FAY30_RS25815 (FAY30_25815) ssbA 5416968..5417495 (-) 528 WP_149872520.1 single-stranded DNA-binding protein Machinery gene
  FAY30_RS25820 (FAY30_25820) rpsF 5417566..5417853 (-) 288 WP_149872521.1 30S ribosomal protein S6 -
  FAY30_RS25825 (FAY30_25825) ltrA 5418114..5419550 (-) 1437 WP_149872629.1 group II intron reverse transcriptase/maturase -
  FAY30_RS25830 (FAY30_25830) ychF 5420236..5421336 (-) 1101 WP_149872522.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19238.14 Da        Isoelectric Point: 4.9719

>NTDB_id=360487 FAY30_RS25815 WP_149872520.1 5416968..5417495(-) (ssbA) [Bacillus sp. S3]
MMNRVVLVGRLTKDPDLRYTPNGVAVATFSLAVNRPFSSQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVVADSVQFLEPKSASGGGGRGNDYYGAPPMEPQGNPYGSSNQNQRQNQNQNQNQNKGFTRMDEDPF
AGNGQIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=360487 FAY30_RS25815 WP_149872520.1 5416968..5417495(-) (ssbA) [Bacillus sp. S3]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGGGTCGCTGTAGC
TACTTTTAGTTTAGCAGTTAACCGTCCGTTTTCTAGTCAGTCAGGTGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
GGCGTAAACCAGCTGAGAATGTGGCGAACTTTTTAAAGAAAGGCAGCCTAGCAGGTGTTGATGGCCGTATTCAAACCCGC
AACTATGAAGGACAAGACGGTAAACGTGTGTATGTTACAGAAGTCGTAGCTGATAGTGTTCAATTCCTTGAACCTAAAAG
TGCGTCAGGCGGCGGCGGGAGAGGCAACGATTATTACGGTGCTCCTCCTATGGAACCACAAGGGAATCCATATGGCAGCA
GCAATCAGAATCAACGACAAAATCAAAATCAGAATCAAAACCAAAATAAAGGGTTTACGCGAATGGATGAAGATCCGTTT
GCCGGAAATGGACAAATTGACATCTCTGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.193

100

0.674
  ssb Latilactobacillus sakei subsp. sakei 23K

55.319

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

60.571

0.394
  ssb Glaesserella parasuis strain SC1401

36.022

100

0.383
  ssb Neisseria meningitidis MC58

34.973

100

0.366
  ssb Neisseria gonorrhoeae MS11

34.973

100

0.366

Multiple sequence alignment