Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GR131_RS24015 Genome accession   NZ_CP047147
Coordinates   5512468..5514081 (+) Length   537 a.a.
NCBI ID   WP_018895573.1    Uniprot ID   -
Organism   Streptomyces sp. GF20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5507468..5519081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS32730 (GR131_23985) lepB 5508106..5509176 (+) 1071 WP_328707459.1 signal peptidase I -
  GR131_RS23990 (GR131_23990) lepB 5509262..5509945 (+) 684 WP_237496840.1 signal peptidase I -
  GR131_RS23995 (GR131_23995) lepB 5510033..5510809 (+) 777 WP_159313205.1 signal peptidase I -
  GR131_RS24000 (GR131_24000) - 5510799..5511317 (+) 519 WP_159313206.1 NUDIX hydrolase -
  GR131_RS24005 (GR131_24005) - 5511380..5511688 (+) 309 WP_003951129.1 DUF2469 domain-containing protein -
  GR131_RS24010 (GR131_24010) - 5512106..5512468 (+) 363 WP_008409405.1 YraN family protein -
  GR131_RS24015 (GR131_24015) comM 5512468..5514081 (+) 1614 WP_018895573.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GR131_RS24020 (GR131_24020) dprA 5514078..5515331 (+) 1254 WP_026235209.1 DNA-processing protein DprA -
  GR131_RS24025 (GR131_24025) whiG 5515552..5516391 (+) 840 WP_003951133.1 RNA polymerase sigma factor WhiG -
  GR131_RS24030 (GR131_24030) - 5516612..5517169 (+) 558 WP_159313972.1 TetR/AcrR family transcriptional regulator -
  GR131_RS32735 - 5517390..5517836 (-) 447 Protein_4762 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 55801.86 Da        Isoelectric Point: 6.7737

>NTDB_id=357774 GR131_RS24015 WP_018895573.1 5512468..5514081(+) (comM) [Streptomyces sp. GF20]
MAFARTYAVTLVGVEGIIVEVQADLEPGVASFALVGLPDKTLVESRDRVRAAVANAGIEWPQRKLTIGLSPASVPKSGSG
FDLAVATAVLGAAELIDPRSLTDLVMIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPECSAAEAALVPGISVLGVRT
LRQLVAVLTDTPVPEEEPDAPGRPDPLLSGFSFPGAGIGAPSQTADGRRLDFGDVAGQHLARGALEVAAAGGHHIYLKGP
PGAGKTMLAERLPGIMPALDRTAALEVTAVHSVAGVLQAGGPLLSRPPYCAPHHSATMQSLVGGGNGLPRPGAVSLAHRG
VLFLDEAPEFGAKALDALRQPLESGHVVVARAAGVVRLPAQFLMVLAANPCPCGRHGTQGDPCDCMPSVVRRYQARLSGP
LLDRVDLRVDVDRVSRTELVGTGERGESTETVAARVLEARQRAEQRLAGTPWRTNGEVSGHALRTRWHAAAGAMQAAERE
LERGMLSARGLDRVLRVAWTVADLRGHDQPDAGDVEAALQLRTGISRGVPSIAAGAR

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=357774 GR131_RS24015 WP_018895573.1 5512468..5514081(+) (comM) [Streptomyces sp. GF20]
ATGGCCTTCGCACGGACCTACGCGGTCACCCTGGTCGGCGTCGAAGGGATCATCGTCGAGGTCCAGGCGGACCTGGAGCC
CGGCGTCGCCTCGTTCGCCCTGGTAGGACTGCCGGACAAGACCCTGGTGGAGAGCCGGGACCGGGTACGTGCCGCGGTGG
CCAACGCCGGCATCGAGTGGCCGCAGCGCAAGCTCACCATCGGCCTCAGTCCGGCCTCGGTCCCCAAGAGCGGCAGCGGA
TTCGACCTCGCCGTCGCCACCGCCGTACTGGGCGCGGCGGAACTCATCGATCCCCGCAGCCTCACCGACCTGGTGATGAT
CGGCGAACTGGGCCTCGACGGCCGCGTGCGGCCCGTACGCGGGGTGCTGCCGGCCGTACTGGCGGCCGCCGAGGCCGGAT
ACGAGCAGGTCGTCGTCCCGGAGTGCTCCGCCGCCGAGGCCGCCCTGGTGCCCGGCATCTCGGTGCTCGGTGTCCGCACC
CTGCGCCAGCTCGTGGCGGTGCTCACCGACACCCCCGTCCCCGAGGAGGAACCCGACGCTCCGGGCCGTCCCGATCCGCT
CCTGTCCGGGTTCAGTTTCCCCGGCGCGGGCATCGGCGCGCCGAGTCAGACGGCGGACGGGCGGCGCCTGGACTTCGGCG
ACGTGGCCGGTCAACATCTCGCACGGGGTGCCCTGGAGGTGGCTGCGGCGGGCGGTCACCACATCTATCTGAAGGGTCCG
CCCGGGGCGGGCAAGACGATGCTCGCCGAGCGGCTCCCCGGCATCATGCCCGCCCTGGACCGCACCGCAGCCCTGGAGGT
CACCGCAGTCCACTCGGTGGCCGGAGTCCTGCAGGCGGGCGGGCCCCTGCTCAGCAGACCGCCTTACTGCGCCCCGCACC
ACTCGGCGACCATGCAGTCCCTCGTCGGAGGAGGCAACGGGCTGCCCCGCCCGGGAGCCGTCTCTCTCGCCCACCGTGGT
GTGCTTTTTCTTGACGAGGCGCCGGAGTTCGGGGCCAAGGCCCTCGACGCGCTGCGGCAGCCCCTCGAATCGGGGCACGT
CGTGGTCGCCCGCGCGGCCGGGGTCGTCCGGCTGCCCGCGCAGTTCCTCATGGTCCTGGCGGCCAACCCCTGTCCGTGCG
GCCGCCACGGAACTCAGGGCGACCCGTGCGACTGCATGCCCTCGGTCGTGCGGCGCTACCAGGCCAGGCTCTCCGGCCCG
CTCCTGGACCGGGTCGACCTCAGGGTCGACGTCGATCGCGTCTCCCGGACCGAACTGGTCGGTACGGGGGAACGGGGTGA
GTCCACGGAAACCGTCGCCGCCCGGGTGCTGGAGGCCCGGCAGCGCGCGGAACAGCGCCTGGCCGGGACGCCGTGGCGAA
CCAACGGCGAGGTGTCGGGCCATGCGCTGCGCACCCGGTGGCACGCGGCGGCGGGCGCCATGCAGGCCGCCGAACGCGAA
CTGGAACGGGGCATGCTCAGCGCCCGCGGCCTCGACCGCGTCCTGCGCGTGGCCTGGACCGTCGCCGACCTGAGGGGTCA
CGACCAGCCCGACGCGGGTGACGTGGAGGCGGCCCTGCAACTGCGCACCGGCATCTCCCGGGGCGTGCCCAGCATCGCGG
CAGGCGCACGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-418)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

38.33

98.138

0.376
  comM Acinetobacter baylyi ADP1

37.64

99.441

0.374
  comM Glaesserella parasuis strain SC1401

38.402

95.531

0.367
  comM Vibrio cholerae O1 biovar El Tor strain E7946

38.552

95.158

0.367
  comM Vibrio cholerae strain A1552

38.552

95.158

0.367
  comM Haemophilus influenzae Rd KW20

38.627

94.972

0.367
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.094

97.393

0.361
  comM Legionella pneumophila strain ERS1305867

36.742

98.324

0.361
  comM Legionella pneumophila str. Paris

36.742

98.324

0.361

Multiple sequence alignment