Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E5678_RS16560 Genome accession   NZ_CP039252
Coordinates   3617690..3619267 (+) Length   525 a.a.
NCBI ID   WP_136179543.1    Uniprot ID   A0A4P7REU9
Organism   Hydrogenophaga sp. PAMC20947     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3612690..3624267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS16540 (E5678_16535) glcE 3613748..3614890 (-) 1143 WP_247596806.1 glycolate oxidase subunit GlcE -
  E5678_RS16545 (E5678_16540) - 3615041..3615313 (-) 273 WP_136179540.1 hypothetical protein -
  E5678_RS16550 (E5678_16545) - 3615516..3616937 (-) 1422 WP_136179541.1 ammonium transporter -
  E5678_RS16555 (E5678_16550) glnK 3616972..3617310 (-) 339 WP_136179542.1 P-II family nitrogen regulator -
  E5678_RS16560 (E5678_16555) comM 3617690..3619267 (+) 1578 WP_136179543.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E5678_RS16565 (E5678_16560) - 3619849..3620553 (-) 705 WP_247596807.1 hypothetical protein -
  E5678_RS16570 (E5678_16565) metH 3620975..3623686 (-) 2712 WP_247597044.1 methionine synthase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 55848.55 Da        Isoelectric Point: 7.4548

>NTDB_id=357640 E5678_RS16560 WP_136179543.1 3617690..3619267(+) (comM) [Hydrogenophaga sp. PAMC20947]
MGLSLVHSRALLGLEARPVQVEVHLANGLPSFTLVGLADTEVKEARERVRSAIANAGLDFPSNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQISDARMQGWEFAGELSLGGDLRPVRGSLAMSLALHRAAEKGGPSLERTRLVLPPGSAEEAALVP
EAQVYRARHLLDVVAQFLPEAKPGEAAPMTSPEIEDNGGWQRVSPTHANNPPQYADLADVKGQVAAKRALEIAAAGGHSL
LMVGPPGSGKSMLAQRFAGLLPPMSTGEALESAAVASLAGRFSLERWAQRPTGAPHHSASAVALVGGGSPPRPGEISLAH
HGVLFLDELPEFPRAALEALREPLESGQIRISRAAMQSEFPARFQLIAAMNPCPCGFLGHPTRSCRCSPDQINRYQSKLS
GPLLDRIDLHVEVPALPPDDLLHGSAGESTDAVRERVVDARERAHARQGQTNQALSGQALDQHIHADPSSLKFLNTTAAR
LGWSARSTHRTLRVARTIADLAKLDEVIVAHVAEAVQYRRALRQG

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=357640 E5678_RS16560 WP_136179543.1 3617690..3619267(+) (comM) [Hydrogenophaga sp. PAMC20947]
ATGGGTTTGTCATTGGTGCACAGCCGTGCACTGCTGGGGCTGGAAGCGCGCCCGGTTCAGGTCGAAGTGCACCTGGCCAA
TGGCCTGCCCAGCTTCACGCTGGTGGGCTTGGCCGACACCGAAGTCAAAGAAGCGCGCGAGCGCGTGCGCTCGGCCATTG
CCAATGCGGGTCTGGATTTCCCCAGCAACAAGCGTATCACCGTCAATCTCGCCCCGGCCGATTTGCCCAAGGATTCGGGC
CGTTTTGACCTGCCGATTGCCCTGGGCATCCTGGCTGCCAGCGGCCAGATCAGCGACGCTCGCATGCAAGGCTGGGAATT
CGCGGGCGAGCTCTCGCTGGGCGGTGATCTGCGGCCGGTGCGCGGCTCGCTGGCCATGAGCCTGGCCCTGCACCGCGCGG
CCGAAAAGGGCGGCCCCAGCCTGGAACGCACCCGTTTGGTGCTCCCACCCGGCAGCGCCGAAGAGGCTGCGCTGGTGCCC
GAGGCCCAGGTCTACCGGGCCAGACACCTGCTGGACGTGGTGGCCCAGTTCCTGCCCGAAGCCAAACCGGGCGAAGCGGC
CCCCATGACCAGCCCCGAAATCGAAGACAACGGCGGCTGGCAGCGCGTGTCCCCCACCCACGCCAACAACCCGCCGCAAT
ACGCCGACCTGGCCGATGTCAAAGGCCAGGTGGCGGCCAAGCGCGCGCTGGAGATCGCTGCGGCCGGCGGGCACAGCCTG
TTGATGGTCGGGCCGCCCGGCTCCGGCAAAAGCATGCTGGCCCAGCGATTCGCTGGCCTGTTGCCGCCCATGAGCACCGG
CGAAGCCCTGGAATCGGCCGCTGTGGCATCGCTGGCCGGCCGCTTCAGCCTGGAGCGCTGGGCCCAGCGCCCCACCGGCG
CGCCCCACCACAGTGCCAGCGCCGTGGCCCTGGTCGGCGGTGGCTCACCACCCCGCCCCGGTGAAATCTCGCTGGCCCAC
CACGGTGTCTTGTTCCTCGATGAATTGCCCGAGTTTCCGCGCGCTGCCCTGGAAGCCCTGCGCGAGCCTCTGGAAAGTGG
CCAGATCCGCATCTCGCGCGCGGCCATGCAAAGCGAATTTCCCGCCCGCTTCCAGCTCATCGCCGCCATGAACCCCTGCC
CCTGCGGTTTTCTGGGCCACCCCACCCGCTCCTGCCGCTGCTCACCCGACCAGATCAACCGCTACCAGAGCAAGCTCAGC
GGCCCGCTACTCGACCGCATCGACCTGCACGTGGAAGTGCCCGCCCTGCCCCCCGACGATCTGCTGCACGGCTCCGCCGG
CGAATCCACCGATGCCGTGCGCGAGCGCGTGGTCGACGCGCGAGAGCGCGCCCACGCCCGCCAGGGCCAGACCAACCAGG
CCCTGAGCGGCCAGGCGCTGGACCAGCACATCCACGCCGATCCCAGTTCCCTCAAGTTTCTCAACACCACGGCAGCCCGC
CTGGGCTGGAGCGCCCGCAGCACCCACAGAACCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCAAGCTCGACGAGGT
GATCGTGGCGCATGTGGCCGAAGCGGTGCAGTACCGGCGGGCGTTGCGGCAAGGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-418)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-519)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7REU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.851

100

0.512
  comM Haemophilus influenzae Rd KW20

49.43

100

0.495
  comM Vibrio campbellii strain DS40M4

49.149

100

0.495
  comM Glaesserella parasuis strain SC1401

49.042

99.429

0.488
  comM Legionella pneumophila str. Paris

47.238

100

0.472
  comM Legionella pneumophila strain ERS1305867

47.238

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.794

99.81

0.417

Multiple sequence alignment