Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GLX30_RS23440 Genome accession   NZ_CP047140
Coordinates   5285954..5286664 (+) Length   236 a.a.
NCBI ID   WP_159692045.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5280954..5291664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS23410 (GLX30_23530) - 5281192..5282358 (-) 1167 WP_208545471.1 acyltransferase family protein -
  GLX30_RS23415 (GLX30_23535) - 5282783..5282977 (+) 195 WP_159692042.1 hypothetical protein -
  GLX30_RS23430 (GLX30_23550) tig 5283583..5284979 (+) 1397 Protein_4688 trigger factor -
  GLX30_RS23435 (GLX30_23555) - 5285306..5285911 (+) 606 WP_159695205.1 ATP-dependent Clp protease proteolytic subunit -
  GLX30_RS23440 (GLX30_23560) clpP 5285954..5286664 (+) 711 WP_159692045.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GLX30_RS23445 (GLX30_23565) clpX 5286812..5288101 (+) 1290 WP_005317626.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GLX30_RS23450 (GLX30_23570) - 5288174..5289148 (-) 975 WP_159692047.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25511.00 Da        Isoelectric Point: 4.9227

>NTDB_id=357554 GLX30_RS23440 WP_159692045.1 5285954..5286664(+) (clpP) [Streptomyces sp. Tu 2975]
MVNTHMSNFPGIPGLSGHTGASASGLYTGPAVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMA
QLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPS
SQTGREQLSDLEIAANEILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTADGALAYGLVDQIVSTRKSTAAAAA

Nucleotide


Download         Length: 711 bp        

>NTDB_id=357554 GLX30_RS23440 WP_159692045.1 5285954..5286664(+) (clpP) [Streptomyces sp. Tu 2975]
ATGGTGAACACCCACATGAGTAACTTCCCCGGCATCCCCGGTCTGTCCGGACACACCGGCGCCTCCGCGAGCGGCCTCTA
CACGGGCCCCGCGGTGGACAACCGCTATGTCGTCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACC
CGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTGATGGCG
CAGCTGCTGTGCCTCGAGTCGATGGACCCGGACCGGGACATCTCTATCTACATCAACAGCCCCGGTGGGTCCTTCACCGC
GCTGACCGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGACGGTGTGCATGGGCCAGGCGGCGTCCGCCG
CGGCCGTGCTGCTCGCCGCCGGTACGCCCGGCAAGCGGATGGCCCTGCCGCACGCCCGTGTGCTGATCCACCAGCCGTCC
TCGCAGACCGGCCGCGAGCAGCTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTTCGTATGCGTGAGCAGCTGGAGGA
GATGCTGGCCAAGCACTCCACCACGCCGATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGACG
GCGCCCTCGCCTACGGCCTCGTGGACCAGATCGTCTCGACCCGTAAGAGCACGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(47-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.474

80.508

0.398
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

79.661

0.377
  clpP Streptococcus thermophilus LMG 18311

44.33

82.203

0.364
  clpP Streptococcus thermophilus LMD-9

44.33

82.203

0.364
  clpP Streptococcus pyogenes JRS4

43.814

82.203

0.36
  clpP Streptococcus pyogenes MGAS315

43.814

82.203

0.36
  clpP Streptococcus mutans UA159

43.814

82.203

0.36