Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY41_RS21505 Genome accession   NZ_CP046835
Coordinates   2874977..2876500 (-) Length   507 a.a.
NCBI ID   WP_158123985.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869977..2881500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS21485 - 2871264..2872250 (+) 987 WP_017419860.1 serine/threonine protein kinase -
  GPY41_RS21490 - 2872283..2872888 (+) 606 WP_017789622.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY41_RS21495 - 2872940..2873821 (-) 882 WP_045610304.1 acyltransferase -
  GPY41_RS21500 - 2873964..2874938 (+) 975 WP_158123984.1 DUF2860 domain-containing protein -
  GPY41_RS21505 comM 2874977..2876500 (-) 1524 WP_158123985.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY41_RS21510 ilvG 2876970..2878616 (+) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  GPY41_RS21515 ilvM 2878628..2878912 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  GPY41_RS21520 ilvE 2878924..2879862 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54725.89 Da        Isoelectric Point: 8.7904

>NTDB_id=356273 GPY41_RS21505 WP_158123985.1 2874977..2876500(-) (comM) [Vibrio vulnificus strain 07-2444]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPYANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=356273 GPY41_RS21505 WP_158123985.1 2874977..2876500(-) (comM) [Vibrio vulnificus strain 07-2444]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCTAAGCGGATCACCGTTAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGACTTGCCGATCGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTGTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTTATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAACAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGTAATCACAATT
TGTTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTACCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTCG
CCCACAACGGCTTACTATTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGCACATTGGCGGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTAAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGAAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCTGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.166

100

0.882
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.024

100

0.84
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  comM Acinetobacter baylyi ADP1

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432