Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY16_RS00275 Genome accession   NZ_CP046832
Coordinates   58145..59668 (+) Length   507 a.a.
NCBI ID   WP_158104864.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53145..64668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS00260 ilvE 54784..55722 (-) 939 WP_011079064.1 branched-chain-amino-acid transaminase -
  GPY16_RS00265 ilvM 55734..56018 (-) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  GPY16_RS00270 ilvG 56030..57676 (-) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  GPY16_RS00275 comM 58145..59668 (+) 1524 WP_158104864.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY16_RS00280 - 59707..60267 (-) 561 Protein_54 DUF2860 family protein -
  GPY16_RS00285 - 60471..61226 (-) 756 WP_158104865.1 hypothetical protein -
  GPY16_RS00290 - 61301..61795 (-) 495 WP_130242892.1 ImmA/IrrE family metallo-endopeptidase -
  GPY16_RS00295 - 62280..63134 (+) 855 Protein_57 YifB family Mg chelatase-like AAA ATPase -
  GPY16_RS00300 - 63173..64147 (-) 975 WP_103195717.1 DUF2860 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54668.84 Da        Isoelectric Point: 8.8059

>NTDB_id=356121 GPY16_RS00275 WP_158104864.1 58145..59668(+) (comM) [Vibrio vulnificus strain 06-2410]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALPPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=356121 GPY16_RS00275 WP_158104864.1 58145..59668(+) (comM) [Vibrio vulnificus strain 06-2410]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCTAAGCGGATCACCGTTAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGACTTGCCGATTGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGAGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGCAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATCTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCCGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGTAATCACAATT
TGCTGTTTTTAGGGCCTCCTGGGACTGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTTG
CCCACAACGGCTTACTGTTTTTGGATGAAATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGTGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGTACGTTGGCAGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGTAAGGTGAATGC
TCTGTTAGGCAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTAGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.363

100

0.884
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.024

100

0.84
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.598

99.014

0.501
  comM Legionella pneumophila strain ERS1305867

50.598

99.014

0.501
  comM Acinetobacter baylyi ADP1

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432