Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   E4Z98_RS00570 Genome accession   NZ_CP038865
Coordinates   121408..122676 (-) Length   422 a.a.
NCBI ID   WP_135255085.1    Uniprot ID   A0AAJ5JLW5
Organism   Vagococcus xieshaowenii strain CF-49     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 116408..127676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS00545 (E4Z98_00545) - 116994..117275 (-) 282 WP_135255089.1 GIY-YIG nuclease family protein -
  E4Z98_RS00550 (E4Z98_00550) - 117265..118008 (-) 744 WP_209316319.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  E4Z98_RS00555 (E4Z98_00555) - 118146..118775 (+) 630 WP_135255088.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  E4Z98_RS00560 (E4Z98_00560) - 118795..120015 (+) 1221 WP_209316320.1 GNAT family N-acetyltransferase -
  E4Z98_RS00565 (E4Z98_00565) - 120192..121358 (+) 1167 WP_135255086.1 cation:proton antiporter -
  E4Z98_RS00570 (E4Z98_00570) htrA 121408..122676 (-) 1269 WP_135255085.1 trypsin-like peptidase domain-containing protein Regulator
  E4Z98_RS00575 (E4Z98_00575) rlmH 123001..123480 (+) 480 WP_135255084.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  E4Z98_RS00580 (E4Z98_00580) sdaAB 123705..124391 (+) 687 WP_135255142.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  E4Z98_RS00585 (E4Z98_00585) sdaAA 124405..125277 (+) 873 WP_135255083.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  E4Z98_RS00590 (E4Z98_00590) - 125449..126765 (+) 1317 WP_135255082.1 DRTGG domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 44386.10 Da        Isoelectric Point: 4.3965

>NTDB_id=356026 E4Z98_RS00570 WP_135255085.1 121408..122676(-) (htrA) [Vagococcus xieshaowenii strain CF-49]
MEQDNKTEKNNQQTSLLKRFGISLAGGILGGGLVLGGAQLLSNDSNSTSTNSTKSQTTQVSNISYDVTSDTTKAVDKVQN
AVVSVINLQKQQAMSDPFGGLFGGNSPSNQKEEDNDNLETSSEGSGVIYRKDGDFAYIVTNNHVVSGSDALEILLNDGTT
IKGELVGRDSYTDLAVIKISSKDIKTTATFGDSDKIKVGEPAIAIGSPLGTEYASSVTQGIISAKNRSIQNTNDDNEPVN
INAIQTDAAINPGNSGGALINAAGQVIGINSVKIASSTSGVSAEGMGFAIPSNDVVNIINQLEKDGKVTRPALGVSMYDL
ANISSQQRSEILNLTDDVTAGIVIMTVQNATPAEKAGLEKYDVIVDIDGEAIESSSDLQSILYNKKVGDTIKVTYYRGKE
KKTTSVKLSIDQSALQQNNTNN

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=356026 E4Z98_RS00570 WP_135255085.1 121408..122676(-) (htrA) [Vagococcus xieshaowenii strain CF-49]
ATGGAACAAGATAATAAAACAGAAAAAAATAATCAACAAACTAGTTTGTTAAAACGATTTGGTATTAGTTTAGCAGGAGG
GATTCTTGGTGGTGGTTTAGTCTTAGGAGGCGCACAACTCTTATCCAACGATTCAAACAGCACTTCTACTAACTCCACTA
AGTCTCAGACTACTCAAGTAAGCAATATTAGTTACGATGTGACTAGTGATACAACTAAAGCCGTGGATAAAGTACAAAAT
GCAGTCGTTTCTGTCATCAACTTACAAAAACAACAAGCCATGTCAGACCCATTTGGTGGCCTTTTTGGTGGTAATAGTCC
ATCTAACCAAAAAGAAGAGGATAATGACAACTTAGAAACTAGCAGTGAAGGAAGCGGGGTTATTTACCGAAAAGATGGCG
ATTTTGCTTATATCGTGACTAATAACCATGTTGTTTCTGGATCTGACGCACTAGAAATCTTATTAAACGATGGGACAACT
ATCAAAGGTGAGCTTGTCGGTCGTGATTCTTATACCGACTTAGCTGTTATTAAAATCAGTAGTAAAGACATCAAAACTAC
CGCAACATTCGGTGATTCTGACAAAATAAAAGTCGGTGAGCCAGCTATTGCGATTGGTTCTCCTTTAGGAACTGAATATG
CAAGTTCGGTAACACAGGGCATCATCTCTGCAAAAAACCGTAGCATCCAAAACACTAATGATGATAACGAACCCGTGAAT
ATCAATGCCATACAAACAGATGCGGCGATCAACCCAGGGAATTCAGGTGGTGCCTTAATCAACGCAGCCGGACAAGTCAT
CGGTATTAATTCTGTTAAAATCGCCTCATCAACATCCGGTGTGTCAGCAGAAGGAATGGGCTTTGCTATTCCAAGTAACG
ACGTTGTTAACATCATTAATCAATTAGAAAAAGATGGTAAAGTAACACGTCCAGCTTTAGGTGTCTCAATGTATGACTTA
GCTAACATCAGCTCACAACAACGTTCAGAAATTCTAAACTTAACCGATGATGTCACAGCAGGTATCGTGATCATGACCGT
ACAAAACGCAACACCGGCTGAAAAAGCAGGTCTAGAAAAATATGACGTGATTGTCGACATTGACGGCGAAGCAATTGAAT
CTTCAAGTGATTTACAATCTATTCTTTACAACAAAAAAGTCGGTGACACCATTAAAGTCACTTACTACCGAGGCAAAGAG
AAGAAAACAACCTCTGTCAAATTAAGCATTGACCAATCTGCCTTGCAACAAAACAACACTAATAACTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(311-408)

Peptidase family M50 (Peptidase_M50)

(10-410)

Trypsin-like peptidase domain (Trypsin_2)

(124-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

58.028

84.123

0.488
  htrA Streptococcus mitis NCTC 12261

51.523

93.365

0.481
  htrA Streptococcus gordonii str. Challis substr. CH1

49.492

93.365

0.462
  htrA Streptococcus pneumoniae TIGR4

53.009

82.701

0.438
  htrA Streptococcus pneumoniae D39

53.009

82.701

0.438
  htrA Streptococcus pneumoniae Rx1

53.009

82.701

0.438
  htrA Streptococcus pneumoniae R6

53.009

82.701

0.438

Multiple sequence alignment