Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HNEAP_RS11925 Genome accession   NC_013422
Coordinates   2561751..2563262 (+) Length   503 a.a.
NCBI ID   WP_012825233.1    Uniprot ID   D0KXL4
Organism   Halothiobacillus neapolitanus c2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2556751..2568262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNEAP_RS11905 (Hneap_2389) - 2557465..2558784 (-) 1320 WP_012825229.1 D-amino acid dehydrogenase -
  HNEAP_RS11910 (Hneap_2390) - 2558950..2559450 (+) 501 WP_012825230.1 winged helix-turn-helix transcriptional regulator -
  HNEAP_RS11915 (Hneap_2391) - 2559570..2561102 (+) 1533 WP_012825231.1 esterase-like activity of phytase family protein -
  HNEAP_RS11920 (Hneap_2392) - 2561274..2561537 (+) 264 WP_012825232.1 accessory factor UbiK family protein -
  HNEAP_RS11925 (Hneap_2393) comM 2561751..2563262 (+) 1512 WP_012825233.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HNEAP_RS11930 (Hneap_2394) cmoB 2563249..2564277 (-) 1029 WP_012825234.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  HNEAP_RS11935 (Hneap_2395) cmoA 2564283..2565059 (-) 777 WP_012825235.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  HNEAP_RS11940 (Hneap_2396) mnmH 2565056..2566168 (-) 1113 WP_012825236.1 tRNA 2-selenouridine(34) synthase MnmH -
  HNEAP_RS11945 (Hneap_2397) selD 2566168..2567229 (-) 1062 WP_012825237.1 selenide, water dikinase SelD -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54067.22 Da        Isoelectric Point: 8.5001

>NTDB_id=35539 HNEAP_RS11925 WP_012825233.1 2561751..2563262(+) (comM) [Halothiobacillus neapolitanus c2]
MSIAKVYSRAQVGIDAPLVTVEAHVTNGLPAITLVGLAETAVRESRDRVRAAILSSGFEFPPKRLTINLAPADLPKESAR
FDLAIAIAILAVTGQIPGKDAEAALQQLKHYEFLGELSLDGGIRPINGSLSAAIATRDARRILVLPKACGDEVSVIKDIH
ALTAHHLTAVVAHLAGQKNLDEIVPRPLEPIDPAMEGDLSEVRGQPRAKRALAIAAAGQHNLLLIGPPGAGKSMLAQRMP
GILPPMTESEAIESARIASISSQGFTPERFGLRSFRSPHHSASSVALIGGGSNPKPGEISLAHFGVLFLDELPEFDRKVL
EALREPLENGKITISRAAQQAEFPAQFQLIAAMNPSPQGVEIDSIAAQRYRAKLSGPLLDRIDMHLEIPRVPATEFNSVA
AEETSAEVRARVTEARAVMLRRQSKPNAQLSSSELGNVAELDPKNQLFLNQAIEKLKLSGRARNRILKVARTIADLDGKP
QIDTACLSEAMGYRNLDRLFRIG

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=35539 HNEAP_RS11925 WP_012825233.1 2561751..2563262(+) (comM) [Halothiobacillus neapolitanus c2]
ATGTCCATTGCCAAAGTTTACAGCCGAGCACAAGTTGGTATTGATGCGCCGCTGGTGACAGTTGAAGCGCATGTCACCAA
TGGGCTACCGGCCATCACACTGGTGGGGCTCGCTGAAACGGCGGTTCGCGAAAGCCGGGATCGTGTCCGTGCCGCGATTT
TATCTTCCGGTTTTGAATTTCCACCCAAGCGGCTCACCATCAATCTCGCGCCCGCCGATTTACCCAAAGAAAGCGCTCGA
TTTGATCTGGCGATTGCCATTGCTATTTTGGCTGTTACCGGACAAATTCCCGGCAAAGATGCCGAAGCGGCGTTACAGCA
ACTCAAACATTATGAATTCTTGGGTGAATTATCCCTCGATGGCGGCATTCGACCGATTAACGGTTCGCTTTCTGCCGCCA
TTGCCACGCGTGATGCGCGTCGTATCCTTGTTTTACCCAAGGCCTGCGGGGATGAAGTATCCGTTATCAAGGATATTCAC
GCCCTGACGGCCCATCATTTAACGGCCGTGGTAGCGCATTTGGCGGGTCAAAAAAATCTCGATGAGATCGTTCCACGTCC
CTTGGAACCGATTGATCCGGCAATGGAAGGCGATTTATCCGAGGTGCGCGGCCAACCCAGAGCCAAACGCGCCCTCGCGA
TTGCCGCCGCAGGCCAGCACAATTTATTGCTGATCGGCCCGCCCGGCGCGGGCAAGAGCATGCTGGCGCAACGAATGCCC
GGCATTCTTCCGCCCATGACCGAAAGCGAAGCCATTGAATCGGCTCGTATCGCCTCGATTTCAAGCCAGGGATTCACGCC
GGAACGTTTTGGCCTGCGGTCGTTTAGAAGCCCGCATCACTCCGCCTCATCGGTGGCCTTGATCGGTGGTGGCTCGAACC
CGAAACCGGGCGAAATTTCACTGGCGCATTTTGGGGTTTTATTTCTCGATGAACTGCCCGAATTTGACCGTAAAGTGCTC
GAAGCCCTGCGTGAACCGCTGGAAAACGGCAAAATCACCATTTCACGCGCGGCGCAGCAAGCCGAATTTCCCGCACAATT
TCAGTTGATTGCCGCCATGAATCCCTCGCCACAAGGGGTGGAAATCGATTCCATCGCGGCGCAACGTTATCGGGCAAAAC
TTTCCGGGCCGCTGCTGGATCGTATCGACATGCATCTGGAAATTCCAAGGGTTCCTGCGACTGAATTCAATTCGGTTGCT
GCTGAAGAAACGTCTGCCGAGGTTCGCGCGCGCGTCACCGAAGCAAGAGCGGTCATGTTGCGGCGGCAGAGTAAACCCAA
TGCACAATTATCTTCGAGCGAACTGGGCAACGTAGCCGAACTCGATCCGAAAAATCAGTTGTTTTTGAATCAGGCCATTG
AAAAACTCAAGCTATCCGGCCGCGCCCGAAACCGGATTTTAAAGGTAGCCCGTACGATTGCCGATCTGGATGGTAAACCG
CAAATTGATACGGCTTGCCTGAGCGAGGCGATGGGTTACCGCAATCTGGATCGATTATTCAGGATCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0KXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.378

100

0.519
  comM Glaesserella parasuis strain SC1401

50.489

100

0.513
  comM Vibrio campbellii strain DS40M4

50.787

100

0.513
  comM Haemophilus influenzae Rd KW20

49.706

100

0.505
  comM Legionella pneumophila str. Paris

46.429

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.429

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.444

100

0.461

Multiple sequence alignment