Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BAMTA208_RS08695 Genome accession   NC_017188
Coordinates   1777179..1777541 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens TA208     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772179..1782541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS08670 (BAMTA208_08950) flhB 1773704..1774783 (-) 1080 WP_013352272.1 flagellar biosynthesis protein FlhB -
  BAMTA208_RS08675 (BAMTA208_08955) fliR 1774783..1775562 (-) 780 WP_013352271.1 flagellar biosynthetic protein FliR -
  BAMTA208_RS08680 (BAMTA208_08960) fliQ 1775569..1775838 (-) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  BAMTA208_RS08685 (BAMTA208_08965) fliP 1775853..1776518 (-) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  BAMTA208_RS08690 (BAMTA208_08970) fliZ 1776511..1777164 (-) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  BAMTA208_RS08695 (BAMTA208_08975) pilH 1777179..1777541 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  BAMTA208_RS08700 (BAMTA208_08980) fliY 1777568..1778701 (-) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  BAMTA208_RS08705 (BAMTA208_08985) fliM 1778691..1779689 (-) 999 WP_013352266.1 flagellar motor switch protein FliM -
  BAMTA208_RS08710 (BAMTA208_08990) fliL 1779723..1780142 (-) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  BAMTA208_RS08715 (BAMTA208_08995) - 1780139..1780354 (-) 216 WP_013352264.1 flagellar FlbD family protein -
  BAMTA208_RS08720 (BAMTA208_09000) flgG 1780394..1781170 (-) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  BAMTA208_RS08725 (BAMTA208_09005) flgD 1781195..1781626 (-) 432 WP_013352262.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=35519 BAMTA208_RS08695 WP_003154238.1 1777179..1777541(-) (pilH) [Bacillus amyloliquefaciens TA208]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=35519 BAMTA208_RS08695 WP_003154238.1 1777179..1777541(-) (pilH) [Bacillus amyloliquefaciens TA208]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383

Multiple sequence alignment