Detailed information NTG0354972

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EQK04_RS00415
• Genome accession: NZ_CP038517
• Coordinates: 74736..76115 (+)
• Length: 459 a.a.
• NCBI ID: WP_017359160.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain SCU11
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 69736..81115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQK04_RS00395 (EQK04_00400)	-	70078..70542 (+)	465	WP_003217184.1	CtsR family transcriptional regulator	-
EQK04_RS00400 (EQK04_00405)	-	70557..71114 (+)	558	WP_007496258.1	UvrB/UvrC motif-containing protein	-
EQK04_RS00405 (EQK04_00410)	-	71119..72210 (+)	1092	WP_017366451.1	protein arginine kinase	-
EQK04_RS00410 (EQK04_00415)	clpC	72207..74642 (+)	2436	WP_007496263.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
EQK04_RS00415 (EQK04_00420)	radA	74736..76115 (+)	1380	WP_017359160.1	DNA repair protein RadA	Machinery gene
EQK04_RS00420 (EQK04_00425)	disA	76118..77197 (+)	1080	WP_007496267.1	DNA integrity scanning diadenylate cyclase DisA	-
EQK04_RS00425 (EQK04_00430)	-	77351..78451 (+)	1101	WP_003217214.1	PIN/TRAM domain-containing protein	-
EQK04_RS00430 (EQK04_00435)	ispD	78465..79154 (+)	690	WP_008345432.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EQK04_RS00435 (EQK04_00440)	ispF	79158..79634 (+)	477	WP_007496273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49995.41 Da
• Isoelectric Point: 7.1218

>NTDB_id=354972 EQK04_RS00415 WP_017359160.1 74736..76115(+) (radA) [Bacillus altitudinis strain SCU11]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=354972 EQK04_RS00415 WP_017359160.1 74736..76115(+) (radA) [Bacillus altitudinis strain SCU11]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCCGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCGGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCCCAGCTGATGAAAATTGCCAAAACGAATGGTATTCCTATTTTTA
TCGTTGGTCACGTAACGAAGGAGGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTGGATACAGTTCTTTATTTT
GAAGGGGAGCGCCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGTTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGTGGTGTGAAACTTGACGAACCAGCGATTGATTTGGCTA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAACGTGTGCAGGAAGCTGCTAAACTAGGATTTAAACGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAATTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (365-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	87.118	99.782	0.869
radA	Streptococcus mitis NCTC 12261	61.81	98.693	0.61
radA	Streptococcus pneumoniae Rx1	61.81	98.693	0.61
radA	Streptococcus pneumoniae D39	61.81	98.693	0.61
radA	Streptococcus pneumoniae R6	61.81	98.693	0.61
radA	Streptococcus pneumoniae TIGR4	61.81	98.693	0.61
radA	Streptococcus mitis SK321	61.81	98.693	0.61