Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E2566_RS00960 Genome accession   NZ_CP038498
Coordinates   212215..213741 (-) Length   508 a.a.
NCBI ID   WP_107168996.1    Uniprot ID   -
Organism   Pectobacterium punjabense strain SS95     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 207215..218741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2566_RS00935 (E2566_00945) ytfR 207370..208890 (+) 1521 WP_107168993.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  E2566_RS00940 (E2566_00950) ytfT 208877..209887 (+) 1011 WP_107168994.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  E2566_RS00945 (E2566_00955) yjfF 209887..210849 (+) 963 WP_107168995.1 galactofuranose ABC transporter, permease protein YjfF -
  E2566_RS00950 (E2566_00960) hdfR 210871..211698 (-) 828 WP_107169025.1 HTH-type transcriptional regulator HdfR -
  E2566_RS00955 (E2566_00965) - 211819..212157 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  E2566_RS00960 (E2566_00970) comM 212215..213741 (-) 1527 WP_107168996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E2566_RS00965 (E2566_00975) - 213708..214040 (-) 333 WP_107168997.1 hypothetical protein -
  E2566_RS00970 (E2566_00980) ilvL 214147..214245 (+) 99 WP_071531109.1 ilv operon leader peptide -
  E2566_RS00975 (E2566_00985) ilvG 214386..216032 (+) 1647 WP_107168998.1 acetolactate synthase 2 catalytic subunit -
  E2566_RS00980 (E2566_00990) ilvM 216090..216350 (+) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  E2566_RS00985 (E2566_00995) - 216375..217301 (+) 927 WP_107168999.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55359.98 Da        Isoelectric Point: 7.1225

>NTDB_id=354802 E2566_RS00960 WP_107168996.1 212215..213741(-) (comM) [Pectobacterium punjabense strain SS95]
MSLAVTYTRAMIGVQAPGVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLGRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSTITSFAQTGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLVNIDATMTRWRARPFRSPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGETSATIRERVLIARQIQLKRANKINALLTSREIEKHCTLAPPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=354802 E2566_RS00960 WP_107168996.1 212215..213741(-) (comM) [Pectobacterium punjabense strain SS95]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCTCCGGGCGTTTACATCGAAGTTCACATCAGCAG
CGGGTTACCCGCTTTAACGCTGGTAGGCCTACCAGAAACCACCGTGAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TTAATTGCGGATTTACATTTCCAGCAAAACGTATCACGGTCAATCTCGCTCCCGCAGACCTGCCAAAAGAGGGGGGACGC
TACGATCTACCCATTGCTCTGGCGATTCTAGCGGCATCAGAACAAATCGATGGTGAAAAGCTAGGCCGCTATGAGTTTCT
CGGCGAGCTCGGCCTGTCTGGCACGTTACGTGGCGTTAATGGCGCGATTCCCGCTGCCTTGGAAGCCATAAAATCAGGCC
GTCAGCTTATCCTGCCAGATGACAATAAACGGGAAATGACACTGATACCTCAGGGTGAAGCGCTGATGGCGGGTCATCTG
CTAGAGGTATGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGCTGTTCCACGATCACGTCCTTTGCACAGACAGGGGA
AGATACGCTAGACCTAAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGTGGCCACA
ACCTGCTATTGCTAGGGCCGCCGGGAACAGGGAAAACGATGCTGGCGAGTCGGCTAGGCAATCTGATGCCTCCATTGAGC
GATGAAGAAGCGTTAGAAAGCGCCGCTATCAACAGCCTGGTTAACATTGATGCCACCATGACGCGCTGGCGGGCCAGACC
CTTCAGATCACCTCACCATAGTTCTTCTATGGCGGCACTCGTAGGCGGAGGCTCGCTGCCCAAACCCGGAGAAATCTCAC
TCGCCCACAACGGTGTGCTATTTTTGGATGAATTACCAGAGTTTGAGCGACGCGTCTTAGACTCGCTGCGAGAACCTCTG
GAATCGGGTGAAATTATCATTTCCCGTACCCGAGCCAAGGTGTGCTACCCGGCACGCGTTCAGCTTGTCGCCGCAATGAA
TCCCAGCCCGTCAGGGCATTACCAAGGCATTCATAACCGATTACCGGCCCAACAGATACTGCGCTATCTCAGTAAACTCT
CCGGTCCCTTCTTAGATCGCTTTGACCTTTCGATCGAGGTTCCTTTACTGCCACCTGGCGTTTTATCTCAGCAACACTAT
CAAGGGGAAACTAGCGCGACGATTCGCGAACGCGTACTGATCGCACGACAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTAACTTCGCGCGAAATAGAAAAGCACTGTACGTTAGCGCCACCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTTGGCGATCGGGAC
AACATTGAGAGAAAGCATCTTGCCGAAGCGCTGAGCTACCGTTGCATGGATCGGTTACTTATACAGCTCCATAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Glaesserella parasuis strain SC1401

63.511

99.803

0.634
  comM Vibrio cholerae strain A1552

63.618

99.016

0.63
  comM Vibrio campbellii strain DS40M4

62.823

99.016

0.622
  comM Legionella pneumophila str. Paris

50.503

97.835

0.494
  comM Legionella pneumophila strain ERS1305867

50.503

97.835

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.771

100

0.47

Multiple sequence alignment