Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | D11S_RS07220 | Genome accession | NC_013416 |
| Coordinates | 1430064..1430393 (+) | Length | 109 a.a. |
| NCBI ID | WP_005548420.1 | Uniprot ID | - |
| Organism | Aggregatibacter actinomycetemcomitans D11S-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1425064..1435393
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D11S_RS07200 (D11S_1500) | thrC | 1425486..1426760 (+) | 1275 | WP_005538116.1 | threonine synthase | - |
| D11S_RS07205 (D11S_1501) | - | 1426819..1427538 (+) | 720 | WP_005548412.1 | 4'-phosphopantetheinyl transferase family protein | - |
| D11S_RS07210 (D11S_1502) | hflK | 1427634..1428887 (+) | 1254 | WP_005548415.1 | FtsH protease activity modulator HflK | - |
| D11S_RS07215 (D11S_1503) | hflC | 1428887..1429774 (+) | 888 | WP_005548417.1 | protease modulator HflC | - |
| D11S_RS07220 (D11S_1505) | comE1/comEA | 1430064..1430393 (+) | 330 | WP_005548420.1 | ComEA family DNA-binding protein | Machinery gene |
| D11S_RS07225 (D11S_1506) | - | 1430506..1431099 (+) | 594 | WP_005548422.1 | XTP/dITP diphosphatase | - |
| D11S_RS07230 (D11S_1507) | - | 1431138..1431461 (+) | 324 | WP_005548424.1 | YbjQ family protein | - |
| D11S_RS07235 (D11S_1508) | hemW | 1431461..1432630 (+) | 1170 | WP_005573619.1 | radical SAM family heme chaperone HemW | - |
| D11S_RS07240 (D11S_1509) | rpiA | 1432729..1433385 (+) | 657 | WP_005548427.1 | ribose-5-phosphate isomerase RpiA | - |
| D11S_RS07245 (D11S_1510) | serA | 1433405..1434637 (+) | 1233 | WP_005548429.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11341.10 Da Isoelectric Point: 9.6912
>NTDB_id=35480 D11S_RS07220 WP_005548420.1 1430064..1430393(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans D11S-1]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL
Nucleotide
Download Length: 330 bp
>NTDB_id=35480 D11S_RS07220 WP_005548420.1 1430064..1430393(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.909 |
100 |
0.615 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.509 |
100 |
0.56 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.34 |
97.248 |
0.431 |
| comEA | Acinetobacter baylyi ADP1 |
39.655 |
100 |
0.422 |
| comEA | Vibrio cholerae C6706 |
39.623 |
97.248 |
0.385 |
| comEA | Vibrio cholerae strain A1552 |
39.623 |
97.248 |
0.385 |