Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   E4K02_RS12460 Genome accession   NZ_CP038258
Coordinates   2535159..2536217 (-) Length   352 a.a.
NCBI ID   WP_166806843.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2530159..2541217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12440 (E4K02_12440) - 2532881..2533180 (-) 300 Protein_2411 AMIN domain-containing protein -
  E4K02_RS12445 (E4K02_12445) pilP 2533243..2533770 (-) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  E4K02_RS12450 (E4K02_12450) pilO 2533781..2534521 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  E4K02_RS12455 (E4K02_12455) pilN 2534518..2535159 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  E4K02_RS12460 (E4K02_12460) pilM 2535159..2536217 (-) 1059 WP_166806843.1 pilus assembly protein PilM Machinery gene
  E4K02_RS12465 (E4K02_12465) ponA 2536379..2538934 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  E4K02_RS12470 (E4K02_12470) - 2538952..2539776 (-) 825 WP_002068938.1 putative RNA methyltransferase -
  E4K02_RS12475 (E4K02_12475) - 2539779..2540111 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39044.64 Da        Isoelectric Point: 4.4618

>NTDB_id=352827 E4K02_RS12460 WP_166806843.1 2535159..2536217(-) (pilM) [Acinetobacter baumannii strain 39741]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTILSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=352827 E4K02_RS12460 WP_166806843.1 2535159..2536217(-) (pilM) [Acinetobacter baumannii strain 39741]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCCGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGACTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGTCATACCATGACGATATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCAGAGCGAAAAAAGATCGTTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.716

100

0.997
  comM Acinetobacter nosocomialis M2

98.864

100

0.989
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423

Multiple sequence alignment