Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   E4K02_RS12455 Genome accession   NZ_CP038258
Coordinates   2534518..2535159 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2529518..2540159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12430 (E4K02_12430) - 2529703..2531571 (-) 1869 Protein_2409 type IV pilus secretin PilQ -
  E4K02_RS12440 (E4K02_12440) - 2532881..2533180 (-) 300 Protein_2411 AMIN domain-containing protein -
  E4K02_RS12445 (E4K02_12445) pilP 2533243..2533770 (-) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  E4K02_RS12450 (E4K02_12450) pilO 2533781..2534521 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  E4K02_RS12455 (E4K02_12455) pilN 2534518..2535159 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  E4K02_RS12460 (E4K02_12460) pilM 2535159..2536217 (-) 1059 WP_166806843.1 pilus assembly protein PilM Machinery gene
  E4K02_RS12465 (E4K02_12465) ponA 2536379..2538934 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  E4K02_RS12470 (E4K02_12470) - 2538952..2539776 (-) 825 WP_002068938.1 putative RNA methyltransferase -
  E4K02_RS12475 (E4K02_12475) - 2539779..2540111 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=352826 E4K02_RS12455 WP_000201224.1 2534518..2535159(-) (pilN) [Acinetobacter baumannii strain 39741]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=352826 E4K02_RS12455 WP_000201224.1 2534518..2535159(-) (pilN) [Acinetobacter baumannii strain 39741]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment