Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   E3983_RS04215 Genome accession   NZ_CP038254
Coordinates   953012..953713 (-) Length   233 a.a.
NCBI ID   WP_245183405.1    Uniprot ID   -
Organism   Legionella israelensis strain HL-0427-4011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 948012..958713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3983_RS04195 (E3983_04195) hemA 948752..950026 (-) 1275 WP_135059986.1 glutamyl-tRNA reductase -
  E3983_RS04200 (E3983_04200) - 950128..951012 (-) 885 WP_135059987.1 hypothetical protein -
  E3983_RS04205 (E3983_04205) - 951428..951712 (+) 285 WP_135059988.1 hypothetical protein -
  E3983_RS04210 (E3983_04210) - 951729..952802 (+) 1074 WP_135059989.1 site-2 protease family protein -
  E3983_RS04215 (E3983_04215) comFC 953012..953713 (-) 702 WP_245183405.1 ComF family protein Machinery gene
  E3983_RS04220 (E3983_04220) bioC 953755..954621 (+) 867 WP_058500685.1 malonyl-ACP O-methyltransferase BioC -
  E3983_RS04225 (E3983_04225) - 954606..955514 (-) 909 WP_135059990.1 polyprenyl synthetase family protein -
  E3983_RS04230 (E3983_04230) - 955507..955737 (-) 231 WP_058500663.1 exodeoxyribonuclease VII small subunit -
  E3983_RS04235 (E3983_04235) - 956181..956846 (+) 666 WP_135059991.1 hypothetical protein -
  E3983_RS04240 (E3983_04240) radA 956916..958271 (+) 1356 WP_058500665.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26716.71 Da        Isoelectric Point: 9.3241

>NTDB_id=352764 E3983_RS04215 WP_245183405.1 953012..953713(-) (comFC) [Legionella israelensis strain HL-0427-4011]
MLQIFASITQRLRFPTVCLLCKQYQRDAQFICKECLCLFKPIKYGCKYCACPLPDAHFPVCGACSTKQPDFDRAIIAYPY
EEPLRTLIHQFKYQEKLYLVSFLSQLMLPFLKECDEIPQCLIPVPMHPQRLKQRGFNQAAVLTKSLAKKMHIPYQLQGCQ
KIINTKPQASLDKKQRAKNLRQAFTVNTLPYQHIALVDDLLTTGNTANELAQAFKKKGVLRVDVWCCARAVLA

Nucleotide


Download         Length: 702 bp        

>NTDB_id=352764 E3983_RS04215 WP_245183405.1 953012..953713(-) (comFC) [Legionella israelensis strain HL-0427-4011]
GTGCTTCAGATTTTCGCCAGTATAACACAGAGATTGCGTTTTCCTACAGTCTGTCTATTATGCAAACAATATCAACGTGA
TGCCCAATTCATCTGCAAAGAGTGTCTCTGTCTTTTTAAGCCGATAAAATATGGCTGTAAATACTGCGCCTGCCCCCTTC
CAGATGCCCATTTTCCAGTGTGCGGAGCCTGCAGCACAAAGCAACCTGATTTTGACCGTGCCATTATCGCTTATCCTTAT
GAAGAACCTTTACGAACCCTTATTCATCAATTCAAATATCAGGAAAAACTCTATCTGGTCTCTTTTCTAAGCCAGTTAAT
GCTTCCTTTTCTAAAAGAATGCGATGAAATCCCTCAATGCCTTATACCGGTCCCTATGCACCCTCAGCGGCTGAAACAAA
GAGGTTTTAATCAGGCTGCCGTACTTACCAAATCCTTGGCGAAAAAAATGCACATCCCCTATCAACTGCAAGGATGTCAA
AAAATCATCAATACTAAACCCCAGGCCAGTCTTGATAAAAAGCAGCGGGCAAAAAATCTCAGGCAGGCATTTACAGTCAA
TACCTTGCCTTATCAACACATCGCGCTTGTCGATGATCTTTTAACCACAGGAAATACGGCTAATGAATTAGCACAAGCTT
TCAAGAAAAAAGGCGTTCTGCGGGTGGATGTCTGGTGCTGTGCTCGAGCCGTATTGGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

58.442

99.142

0.579
  comFC Legionella pneumophila strain ERS1305867

62.903

79.828

0.502

Multiple sequence alignment