Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GOM47_RS00170 Genome accession   NZ_CP046524
Coordinates   31669..32439 (+) Length   256 a.a.
NCBI ID   WP_235080690.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26669..37439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS00145 (GOM47_00140) - 27078..27572 (+) 495 WP_235080686.1 beta-class carbonic anhydrase -
  GOM47_RS00150 (GOM47_00145) - 27786..28754 (+) 969 WP_235080687.1 ribose-phosphate diphosphokinase -
  GOM47_RS00155 (GOM47_00150) - 28874..29311 (+) 438 WP_033583537.1 CoA-binding protein -
  GOM47_RS00160 (GOM47_00155) - 29339..30349 (-) 1011 WP_235080688.1 YeiH family protein -
  GOM47_RS00165 (GOM47_00160) - 30503..31672 (+) 1170 WP_235080689.1 pyridoxal phosphate-dependent aminotransferase -
  GOM47_RS00170 (GOM47_00165) recO 31669..32439 (+) 771 WP_235080690.1 DNA repair protein RecO Machinery gene
  GOM47_RS00175 (GOM47_00170) plsX 32436..33428 (+) 993 WP_235080691.1 phosphate acyltransferase PlsX -
  GOM47_RS00180 (GOM47_00175) - 33433..33669 (+) 237 WP_235080692.1 acyl carrier protein -
  GOM47_RS00185 (GOM47_00180) - 34121..34309 (+) 189 WP_235080693.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  GOM47_RS00190 (GOM47_00185) - 34327..34494 (+) 168 WP_173259486.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  GOM47_RS00195 (GOM47_00190) - 34504..34692 (+) 189 WP_235080694.1 hypothetical protein -
  GOM47_RS00200 - 34717..34926 (+) 210 WP_235080695.1 bacteriocin immunity protein -
  GOM47_RS00205 (GOM47_00195) - 35040..35258 (+) 219 WP_235080696.1 hypothetical protein -
  GOM47_RS00210 (GOM47_00200) - 35251..35445 (+) 195 WP_235080697.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29815.26 Da        Isoelectric Point: 5.1762

>NTDB_id=352763 GOM47_RS00170 WP_235080690.1 31669..32439(+) (recO) [Streptococcus oralis strain SOT]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=352763 GOM47_RS00170 WP_235080690.1 31669..32439(+) (recO) [Streptococcus oralis strain SOT]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAAATTTT
TACCGAGCAGGCAGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTTAGCTACATCGAGGACTATCACGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCAACCTATGTGGCTGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGGAAGACTCTAGAGTTAATGGAAGCAGGCATAGATTATCAGGTTTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTCAACTTTAATGAGTGCGTCTTTTGCCATCGGGTGGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCTTGTCTTTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGCCATCT
GAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGCCGG
AAATCAAGCAAGACTTGCGCAAGTTTATAGACCAAATCTACGAAGAGTATGTTGGAATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.094

100

0.961