Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   GE024_RS11175 Genome accession   NZ_CP046521
Coordinates   1268937..1269158 (+) Length   73 a.a.
NCBI ID   WP_232038576.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263937..1274158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS06380 (GE024_06390) - 1265049..1266302 (+) 1254 WP_003043954.1 extracellular solute-binding protein -
  GE024_RS06385 (GE024_06395) - 1266586..1267947 (+) 1362 WP_093998921.1 carbohydrate ABC transporter permease -
  GE024_RS06390 (GE024_06400) - 1267947..1268783 (+) 837 WP_156667701.1 sugar ABC transporter permease -
  GE024_RS11175 ccpA 1268937..1269158 (+) 222 WP_232038576.1 LacI family DNA-binding transcriptional regulator Regulator
  GE024_RS11180 - 1269480..1269641 (-) 162 WP_232038577.1 hypothetical protein -
  GE024_RS06400 (GE024_06410) - 1269883..1270695 (-) 813 Protein_1210 IS630 transposase-related protein -
  GE024_RS06405 (GE024_06415) dltD 1270896..1272158 (-) 1263 WP_093998919.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  GE024_RS06410 (GE024_06420) dltC 1272151..1272390 (-) 240 WP_002984216.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  GE024_RS06415 (GE024_06425) dltB 1272406..1273662 (-) 1257 WP_093998918.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 8236.30 Da        Isoelectric Point: 8.0898

>NTDB_id=352643 GE024_RS11175 WP_232038576.1 1268937..1269158(+) (ccpA) [Streptococcus canis strain HL_100]
MTSEITIKDIAREVGISVTTVSYVLHQRNDQKISEETRNKALHISNLLNYTPNQAARSLSHHNQTVLSCITNM

Nucleotide


Download         Length: 222 bp        

>NTDB_id=352643 GE024_RS11175 WP_232038576.1 1268937..1269158(+) (ccpA) [Streptococcus canis strain HL_100]
ATGACATCTGAAATTACTATTAAAGATATTGCGCGAGAAGTCGGGATTTCTGTAACGACCGTTTCTTACGTGTTACACCA
GCGCAATGATCAAAAAATTAGTGAAGAAACCCGCAATAAGGCCCTTCATATTAGCAACCTTCTTAACTATACGCCTAATC
AGGCAGCCAGATCATTGTCACATCATAATCAAACAGTGTTGTCCTGTATTACAAATATGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

41.429

95.89

0.397
  ccpA Streptococcus gordonii str. Challis substr. CH1

40.278

98.63

0.397

Multiple sequence alignment