Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GE024_RS00295 Genome accession   NZ_CP046521
Coordinates   36947..37711 (+) Length   254 a.a.
NCBI ID   WP_003045876.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31947..42711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS00275 (GE024_00275) mreC 32893..33711 (+) 819 WP_093999202.1 rod shape-determining protein MreC -
  GE024_RS00280 (GE024_00280) mreD 33711..34211 (+) 501 WP_093999203.1 rod shape-determining protein MreD -
  GE024_RS00285 (GE024_00285) pcsB 34307..35536 (+) 1230 WP_093999204.1 peptidoglycan hydrolase PcsB -
  GE024_RS00290 (GE024_00290) - 35769..36731 (+) 963 WP_003045875.1 ribose-phosphate diphosphokinase -
  GE024_RS00295 (GE024_00295) recO 36947..37711 (+) 765 WP_003045876.1 DNA repair protein RecO Machinery gene
  GE024_RS00300 (GE024_00300) plsX 37821..38828 (+) 1008 WP_093999205.1 phosphate acyltransferase PlsX -
  GE024_RS00305 (GE024_00305) - 38821..39063 (+) 243 WP_003045880.1 phosphopantetheine-binding protein -
  GE024_RS00310 (GE024_00310) purC 39223..39933 (+) 711 WP_003045984.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30014.27 Da        Isoelectric Point: 5.9884

>NTDB_id=352544 GE024_RS00295 WP_003045876.1 36947..37711(+) (recO) [Streptococcus canis strain HL_100]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLASVVQPLTVADFIFKLNESGLSYINDYNQVDTYRY
INEDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEILTNIFEVQVLERFGISINFHDCAFCHRVGL
PFDFSHQYSGVLCPEHYHKDERRNHLDPNVIYLLDRFQTIQFEELRTISLKDDMKRKLRHFIDELYHDYVGLQLKSKIFI
DDLSKWGNIMKQKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=352544 GE024_RS00295 WP_003045876.1 36947..37711(+) (recO) [Streptococcus canis strain HL_100]
ATGCAGTTAAACGAGTCTTTGGGGATTGTCCTTTTTAATAGGAATTATCGGGAAGATGATAAATTGGTCAAGATTTTTAC
GGAGACGGCTGGGAAACGCATGTTTTTCGTAAAACATATTAGTCGTTCTAAACTTGCTTCGGTGGTTCAGCCCTTGACAG
TTGCTGACTTTATCTTTAAGTTAAATGAGTCAGGTCTTTCCTACATTAATGATTATAATCAGGTGGATACTTATCGGTAC
ATTAATGAAGATCTCTTTCGACTATCTTATGCAAGCTATGTGGTGGCTTTGGCAGATGCTGCTATTTCGGACAATGAACC
TGATCCTCATTTATTTGCTTTTTTGAAAAAGACCCTTGATTTGATGGAAGAGGGGTTAGATTATGAGATTTTAACCAATA
TTTTTGAAGTTCAAGTGTTAGAACGGTTTGGAATTAGCATTAATTTTCATGACTGTGCTTTTTGTCATCGTGTGGGTCTG
CCATTTGATTTTTCACATCAGTATTCAGGAGTGCTTTGTCCAGAACATTATCATAAAGATGAACGTCGTAATCATCTAGA
TCCCAATGTGATTTATTTGTTAGATCGTTTTCAAACCATTCAGTTTGAGGAGTTAAGGACCATTTCTTTGAAGGATGATA
TGAAAAGAAAGCTTCGTCATTTTATTGATGAATTGTATCACGATTATGTAGGGCTTCAGTTGAAAAGCAAGATCTTTATT
GACGATTTGAGTAAATGGGGTAACATTATGAAACAAAAGGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.306

97.638

0.618

Multiple sequence alignment