Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   E3H47_RS12840 Genome accession   NZ_CP038022
Coordinates   2727198..2727908 (-) Length   236 a.a.
NCBI ID   WP_005404626.1    Uniprot ID   A0A2T1J168
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722198..2732908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS12820 (E3H47_12825) aroB 2722784..2723869 (-) 1086 WP_138000909.1 3-dehydroquinate synthase -
  E3H47_RS15615 (E3H47_12830) aroK 2723888..2724439 (-) 552 WP_005024215.1 shikimate kinase AroK -
  E3H47_RS12830 (E3H47_12835) pilQ 2724476..2726656 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  E3H47_RS12835 (E3H47_12840) pilP 2726674..2727201 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  E3H47_RS12840 (E3H47_12845) comO 2727198..2727908 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  E3H47_RS12845 (E3H47_12850) pilN 2727905..2728564 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  E3H47_RS12850 (E3H47_12855) comM 2728564..2729622 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  E3H47_RS12855 (E3H47_12860) ponA 2729784..2732330 (+) 2547 WP_138000911.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26946.23 Da        Isoelectric Point: 4.4700

>NTDB_id=351517 E3H47_RS12840 WP_005404626.1 2727198..2727908(-) (comO) [Acinetobacter radioresistens strain DD78]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=351517 E3H47_RS12840 WP_005404626.1 2727198..2727908(-) (comO) [Acinetobacter radioresistens strain DD78]
ATGAGTCGTGAAGAATTCGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACGCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAAGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTAGAAAGTGAAATTCGGCAGGAGTTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T1J168

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

71.946

93.644

0.674

Multiple sequence alignment