Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   E3H47_RS12830 Genome accession   NZ_CP038022
Coordinates   2724476..2726656 (-) Length   726 a.a.
NCBI ID   WP_005024212.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2719476..2731656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS12815 (E3H47_12820) - 2721913..2722776 (-) 864 WP_005024218.1 hypothetical protein -
  E3H47_RS12820 (E3H47_12825) aroB 2722784..2723869 (-) 1086 WP_138000909.1 3-dehydroquinate synthase -
  E3H47_RS15615 (E3H47_12830) aroK 2723888..2724439 (-) 552 WP_005024215.1 shikimate kinase AroK -
  E3H47_RS12830 (E3H47_12835) pilQ 2724476..2726656 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  E3H47_RS12835 (E3H47_12840) pilP 2726674..2727201 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  E3H47_RS12840 (E3H47_12845) comO 2727198..2727908 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  E3H47_RS12845 (E3H47_12850) pilN 2727905..2728564 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  E3H47_RS12850 (E3H47_12855) comM 2728564..2729622 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78765.46 Da        Isoelectric Point: 5.4971

>NTDB_id=351515 E3H47_RS12830 WP_005024212.1 2724476..2726656(-) (pilQ) [Acinetobacter radioresistens strain DD78]
MKKSFQEFLMGDGNSMIHLYRQFAMGAVAVAMMQVASAAVNITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLI
LDFDQAKQNLKQPSIPVATNEASAIHVASDEQRSRIIVSLKDAGAFTTRVEGNTFILKINPVTGAPTVLPQPVAVAQQPA
QGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMNDFATPVSTVDAYNEGGNGIITI
QSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYSGKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGDVIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGRN
SGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTK
EMGVKWGILSQGITRNNSLLVGGSETTLWNLRDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSA
LQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSDTPG
NPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVND
SATGNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=351515 E3H47_RS12830 WP_005024212.1 2724476..2726656(-) (pilQ) [Acinetobacter radioresistens strain DD78]
ATGAAAAAGAGTTTTCAAGAATTTTTGATGGGGGATGGCAACAGCATGATTCATTTATATCGTCAATTTGCGATGGGAGC
AGTTGCTGTAGCAATGATGCAGGTAGCAAGTGCAGCGGTCAATATTACCAATATTGTACCTATGCAGATTCCGGGACAAG
GGACAGAAATTCGAGTCATGTTTAATGGATTGCCGCCCCAGCCCCAGGCTTATCAGCTTGAACAGCCTTCGCGACTGATC
TTAGACTTTGATCAGGCCAAACAAAATCTTAAACAGCCTAGTATTCCGGTTGCTACCAATGAAGCAAGCGCAATTCATGT
GGCCTCTGATGAACAACGTTCCCGAATTATTGTAAGTTTAAAAGATGCAGGTGCCTTTACTACCCGTGTAGAAGGCAATA
CTTTTATTTTAAAGATTAATCCGGTAACAGGCGCGCCTACAGTATTGCCACAGCCAGTTGCTGTAGCACAGCAGCCTGCT
CAGGGTATCTCGAACATTGGTTTCCAGCGTGGAAGTCAGGGCGAGGGACAGGTTTTAATTGATTTTCTGAACCCGAATAC
TCCTGCTGATGTACAGCAGCAGGGAAGTAAAGTCATAGTCAGGATGCTGGGAAATAAAATCCCTTCCCATCTAATCCGCC
GTTTGAATATGAATGATTTTGCCACGCCGGTCTCGACTGTTGATGCCTATAATGAAGGCGGTAATGGCATTATTACTATT
CAATCAACTGGCAGTTATGAGTATATGGCGTATCAGACTGAGAACCGCTTAACAGTCAGTTTAAAGCGCCCGGAAGAAAA
GAGTACGGTCAAAACCCGTTCTGCACCTAATTATAGCGGTAAAAAGGTTTCACTCGACTTTCAGGATATTGAGGTTCGTC
GGGTATTACAGTTGTTAGCAGATTTCACTGGTATCAACCTGGTTGCAGCCGACTCTGTTCAGGGAAATATTACGTTGCGC
CTGAAAGATGTACCATGGGACCAGGCTTTAGACATTATTTTAAAAACCAAAAACCTGGATAAACGTCGTAATGGTGATGT
AATCTGGATTGCTCCGGTTGCAGAGCTGATTAAAGCAGAAGAGGAAGAGGCTAAGGCAATTGCGCAAAGTACCAGACTTA
TGCCTTTACAAACTGAATATATCCAGCTGAATTATGCAAAAGCTGTCGATATCGAAAAACTGATTACCCAAGGCAGAAAT
AGTGGTAATGGTAGTGCTAACGGTGCTTCAAACAATACGGAAGCACTGGGTGATAGTGTGGGAAGCCTGCTAAGTCCAAG
AGGAACCATTTCAATAGACCCACGTACCAATACCTTAATCATTAATGATACGGCTCAGAAACTTGACCAGATCCGCCGTA
TGATTGATCTTCTGGATGTAGCGGTAAAACAGGTAATGGTTGAGGCCCGTATTGTCAGGGCTAGTACTGACTTCACCAAA
GAAATGGGCGTGAAGTGGGGAATTCTTTCACAGGGTATTACCCGTAATAACAGCCTGCTGGTCGGCGGCAGTGAAACCAC
CTTATGGAATCTGCGTGATCCTGATGATGAAGGCAAATACACCATAGAGCGTCCACAAAACCTGAATGTGGATTTAGGCG
TTACAGCTCCGGGTGCAAGCCGTATTGCCTTCGGTTTAATTAGTCTTTCTGATTTTATGCTGGATCTCGAATTGTCAGCC
TTGCAGGCTGATGGTTATGGTGAAGTCATTTCTACGCCGAAAGTACTAACAGCTGACAAACAGCAGGCTCGAGTTGCTTC
TGGTACTCAAATTCCCTACCAGTCTTCAGAGGGCGGTGGCGCCAATGCAGTTTCTACCACTGAATTTGTGGATGCTACTT
TAAGTCTGAATGTAACACCAAGTATTACTCCTGATGGTAAAATCCAGATGTTACTGAACATTACCAGCGATACTCCGGGG
AACCCGACACCAACTGGCCAGATCGCGATTAACAAGAATGAAATTAATACTAATGTGCTGGTTAACAATGGTGAAACTGT
AGTCCTTGGCGGTATTTTTGAACAGGAAACCAGGAATACGCAAACGAAAGTACCTGTTCTCGGAGACCTGCCGGGTGTAG
GCCGTTTATTCCGCCGTGATGCTAAAAGTGATAACAAGCGTGAGTTACTGATTTTTGTCACACCACGAATTGTTAATGAC
AGTGCGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-352)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

AMIN domain (AMIN)

(55-136)

Bacterial type II and III secretion system protein (Secretin)

(560-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.416

100

0.734
  pilQ Acinetobacter baumannii strain A118

73.278

100

0.733
  comQ Acinetobacter baylyi ADP1

73.072

98.209

0.718
  pilQ Pseudomonas aeruginosa PAK

39.669

100

0.397
  pilQ Legionella pneumophila strain Lp02

38.384

95.455

0.366
  pilQ Legionella pneumophila strain ERS1305867

38.273

95.73

0.366

Multiple sequence alignment