Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   E3H47_RS12845 Genome accession   NZ_CP038022
Coordinates   2727905..2728564 (-) Length   219 a.a.
NCBI ID   WP_138000910.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722905..2733564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS15615 (E3H47_12830) aroK 2723888..2724439 (-) 552 WP_005024215.1 shikimate kinase AroK -
  E3H47_RS12830 (E3H47_12835) pilQ 2724476..2726656 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  E3H47_RS12835 (E3H47_12840) pilP 2726674..2727201 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  E3H47_RS12840 (E3H47_12845) comO 2727198..2727908 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  E3H47_RS12845 (E3H47_12850) pilN 2727905..2728564 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  E3H47_RS12850 (E3H47_12855) comM 2728564..2729622 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  E3H47_RS12855 (E3H47_12860) ponA 2729784..2732330 (+) 2547 WP_138000911.1 penicillin-binding protein PBP1a -
  E3H47_RS12860 (E3H47_12865) - 2732377..2733183 (-) 807 WP_005024201.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24259.64 Da        Isoelectric Point: 4.6921

>NTDB_id=351518 E3H47_RS12845 WP_138000910.1 2727905..2728564(-) (pilN) [Acinetobacter radioresistens strain DD78]
MTTINLLPWRDELREQRKKQFIIICIGVALLGLAGVVLTWMYYDRKLDDQEQANQLIISTNQNLDIQLKSLDGLQEQRDA
IIERMNLIQGLQGKRPVTVRLVDELARVIPTNMYLTKFARTGDKFTLEGKAESPNTVAELLRGLEASPWYRNAFMNSFLA
AEEKKEQTPTSLIPRPEENYGSFVVTVDAGEIAADSPPSADPNAPTNTAATGPAAGAAQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=351518 E3H47_RS12845 WP_138000910.1 2727905..2728564(-) (pilN) [Acinetobacter radioresistens strain DD78]
ATGACAACAATTAACCTGCTCCCTTGGCGTGATGAGCTAAGGGAACAACGGAAAAAGCAATTTATTATTATTTGTATTGG
GGTGGCATTACTAGGTTTAGCCGGAGTAGTACTGACCTGGATGTACTATGACCGCAAGCTGGATGATCAGGAACAAGCTA
ATCAACTGATTATCAGTACTAACCAGAACCTGGATATACAGCTTAAATCTCTAGATGGCCTGCAAGAACAGCGTGATGCC
ATTATTGAGCGCATGAACCTGATTCAGGGCTTACAGGGTAAACGTCCGGTTACTGTTCGTTTGGTGGATGAGCTGGCACG
TGTAATCCCAACCAATATGTATCTGACCAAATTTGCACGGACTGGTGATAAATTTACTCTCGAAGGGAAGGCAGAAAGCC
CGAACACTGTAGCTGAGCTTTTGCGTGGTCTAGAAGCTTCACCTTGGTATCGTAATGCCTTTATGAACTCATTCCTTGCC
GCGGAAGAAAAGAAAGAGCAGACCCCAACTTCGCTGATACCTCGACCAGAAGAAAACTATGGCAGTTTTGTTGTAACTGT
AGATGCAGGTGAGATTGCTGCTGATAGTCCGCCATCGGCTGATCCCAATGCACCAACCAATACAGCAGCAACGGGTCCTG
CAGCGGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.364

100

0.717
  comN Acinetobacter baylyi ADP1

68.545

97.26

0.667

Multiple sequence alignment