Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3H47_RS13170 Genome accession   NZ_CP038022
Coordinates   2800924..2801508 (-) Length   194 a.a.
NCBI ID   WP_138000928.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2791114..2800765 2800924..2801508 flank 159


Gene organization within MGE regions


Location: 2791114..2801508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS13135 (E3H47_13140) - 2791114..2792937 (+) 1824 WP_138000925.1 AAA family ATPase -
  E3H47_RS13140 (E3H47_13145) - 2792930..2793850 (+) 921 WP_129717606.1 HAMP domain-containing sensor histidine kinase -
  E3H47_RS13145 (E3H47_13150) - 2793850..2795304 (+) 1455 WP_165353931.1 response regulator -
  E3H47_RS13150 (E3H47_13155) - 2795456..2795875 (-) 420 WP_129717981.1 hypothetical protein -
  E3H47_RS13155 (E3H47_13160) - 2795877..2798000 (-) 2124 WP_138000926.1 integrase -
  E3H47_RS13160 (E3H47_13165) - 2797993..2799549 (-) 1557 WP_138000927.1 site-specific integrase -
  E3H47_RS13165 (E3H47_13170) - 2799542..2800744 (-) 1203 WP_228263131.1 site-specific integrase -
  E3H47_RS13170 (E3H47_13175) ssb 2800924..2801508 (-) 585 WP_138000928.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21043.74 Da        Isoelectric Point: 6.4820

>NTDB_id=351521 E3H47_RS13170 WP_138000928.1 2800924..2801508(-) (ssb) [Acinetobacter radioresistens strain DD78]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGGGFNNNSNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=351521 E3H47_RS13170 WP_138000928.1 2800924..2801508(-) (ssb) [Acinetobacter radioresistens strain DD78]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGCTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTTA
ACAATAATCAGGGTAGCCAAGGCGGTTATGGTAACGGCAACCAGCAGGGTGGTGGTTTTAATAATAACAGCAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCTTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.271

100

0.557
  ssb Vibrio cholerae strain A1552

42.647

100

0.448
  ssb Neisseria gonorrhoeae MS11

41

100

0.423
  ssb Neisseria meningitidis MC58

40.5

100

0.418

Multiple sequence alignment