Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | KRP1_RS24840 | Genome accession | NZ_CP046069 |
| Coordinates | 5349151..5349615 (-) | Length | 154 a.a. |
| NCBI ID | WP_021205141.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain KRP1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5344151..5354615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KRP1_RS24825 (KRP1_24940) | nadC | 5346661..5347509 (+) | 849 | WP_003161760.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| KRP1_RS24835 (KRP1_24950) | - | 5347690..5349069 (-) | 1380 | WP_223719891.1 | O-antigen ligase family protein | - |
| KRP1_RS24840 (KRP1_24955) | pilA/pilAI | 5349151..5349615 (-) | 465 | WP_021205141.1 | pilin | Machinery gene |
| KRP1_RS24845 (KRP1_24960) | pilB | 5349846..5351546 (+) | 1701 | WP_021205142.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KRP1_RS24850 (KRP1_24965) | pilC | 5351550..5352767 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| KRP1_RS24855 (KRP1_24970) | pilD | 5352768..5353640 (+) | 873 | WP_003107301.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| KRP1_RS24860 (KRP1_24975) | coaE | 5353637..5354248 (+) | 612 | WP_023114838.1 | dephospho-CoA kinase | - |
| KRP1_RS24865 (KRP1_24980) | yacG | 5354245..5354445 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16076.44 Da Isoelectric Point: 9.0145
>NTDB_id=350028 KRP1_RS24840 WP_021205141.1 5349151..5349615(-) (pilA/pilAI) [Pseudomonas aeruginosa strain KRP1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKTPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKTPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=350028 KRP1_RS24840 WP_021205141.1 5349151..5349615(-) (pilA/pilAI) [Pseudomonas aeruginosa strain KRP1]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGACTCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGACTCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.945 |
94.805 |
0.455 |
| pilA | Pseudomonas aeruginosa PAK |
42.857 |
100 |
0.448 |
| pilA | Acinetobacter baumannii strain A118 |
45.205 |
94.805 |
0.429 |
| comP | Acinetobacter baylyi ADP1 |
39.264 |
100 |
0.416 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.776 |
95.455 |
0.37 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.007 |
90.26 |
0.37 |