Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E1H39_RS06915 Genome accession   NZ_CP037812
Coordinates   1430383..1431429 (+) Length   348 a.a.
NCBI ID   WP_021364420.1    Uniprot ID   A0A9X8RFQ1
Organism   Clostridioides difficile strain Cd16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425383..1436429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1H39_RS06900 (E1H39_07065) mnmH 1427180..1428238 (+) 1059 WP_003433322.1 tRNA 2-selenouridine(34) synthase MnmH -
  E1H39_RS06905 (E1H39_07070) rimO 1428232..1429566 (+) 1335 WP_003433320.1 30S ribosomal protein S12 methylthiotransferase RimO -
  E1H39_RS06910 (E1H39_07075) pgsA 1429553..1430095 (+) 543 WP_009889106.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E1H39_RS06915 (E1H39_07080) recA 1430383..1431429 (+) 1047 WP_021364420.1 recombinase RecA Machinery gene
  E1H39_RS06920 (E1H39_07085) rny 1431605..1433146 (+) 1542 WP_003428216.1 ribonuclease Y -
  E1H39_RS06925 (E1H39_07090) - 1433781..1435562 (+) 1782 WP_003438344.1 UvrD-helicase domain-containing protein -
  E1H39_RS06930 (E1H39_07095) lepB 1435644..1436174 (-) 531 WP_009902411.1 signal peptidase I -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37389.74 Da        Isoelectric Point: 4.8236

>NTDB_id=350028 E1H39_RS06915 WP_021364420.1 1430383..1431429(+) (recA) [Clostridioides difficile strain Cd16]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=350028 E1H39_RS06915 WP_021364420.1 1430383..1431429(+) (recA) [Clostridioides difficile strain Cd16]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

67.055

98.563

0.661
  recA Streptococcus mitis SK321

67.456

97.126

0.655
  recA Streptococcus mitis NCTC 12261

68.085

94.54

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

69.565

92.529

0.644
  recA Streptococcus pneumoniae Rx1

67.173

94.54

0.635
  recA Streptococcus pneumoniae TIGR4

67.173

94.54

0.635
  recA Streptococcus pneumoniae R6

67.173

94.54

0.635
  recA Streptococcus pneumoniae D39

67.173

94.54

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.569

95.977

0.629
  recA Streptococcus pyogenes NZ131

66.972

93.966

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

64.955

95.115

0.618
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae strain FA1090

66.987

89.655

0.601
  recA Acinetobacter baylyi ADP1

64.396

92.816

0.598
  recA Pseudomonas stutzeri DSM 10701

63.889

93.103

0.595
  recA Helicobacter pylori strain NCTC11637

61.976

95.977

0.595
  recA Helicobacter pylori 26695

61.976

95.977

0.595
  recA Acinetobacter baumannii D1279779

63.777

92.816

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.048

95.402

0.592
  recA Vibrio cholerae strain A1552

62.048

95.402

0.592
  recA Glaesserella parasuis strain SC1401

64.174

92.241

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

93.103

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.558

88.506

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment