Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NMO_RS10610 Genome accession   NC_013016
Coordinates   2061326..2062513 (-) Length   395 a.a.
NCBI ID   WP_015815969.1    Uniprot ID   C6S9I0
Organism   Neisseria meningitidis alpha14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2056326..2067513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS10585 (NMO_1916) - 2056625..2057002 (-) 378 WP_002233408.1 helix-turn-helix domain-containing protein -
  NMO_RS10595 (NMO_1918) - 2057693..2058388 (+) 696 WP_002233407.1 hypothetical protein -
  NMO_RS10600 (NMO_1919) topA 2058461..2060767 (-) 2307 WP_002234458.1 type I DNA topoisomerase -
  NMO_RS10605 (NMO_1920) - 2060839..2061300 (-) 462 WP_002215351.1 DUF494 domain-containing protein -
  NMO_RS10610 (NMO_1921) dprA 2061326..2062513 (-) 1188 WP_015815969.1 DNA-processing protein DprA Machinery gene
  NMO_RS10615 (NMO_1922) - 2062604..2063881 (-) 1278 WP_015815970.1 sigma-54-dependent transcriptional regulator -
  NMO_RS10620 (NMO_1923) - 2063874..2065991 (-) 2118 WP_015815971.1 sensor histidine kinase -
  NMO_RS10625 (NMO_1924) - 2065991..2066590 (-) 600 WP_002216221.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41815.84 Da        Isoelectric Point: 6.1732

>NTDB_id=34988 NMO_RS10610 WP_015815969.1 2061326..2062513(-) (dprA) [Neisseria meningitidis alpha14]
MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQVAPAVRHKQAAEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGEKGIPVVSGMASGIDT
AAHQGALQAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTSDTGSRAVQA
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=34988 NMO_RS10610 WP_015815969.1 2061326..2062513(-) (dprA) [Neisseria meningitidis alpha14]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGCTTCCTGCTGCTGCT
GCGCCGTTTCGGCAGCGCGTCAAACGCCCTGTCCGCACCGGCGGAACAGGTCGCCCCGGCGGTGCGGCACAAGCAGGCGG
CCGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGAGAGAAAGGCATTCCCGTTGTGTCGGGTATGGCTTCGGGCATCGATACC
GCCGCCCATCAGGGTGCGTTGCAGGCGGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGACTGATTGTCAGCGAGTTCCCCATCGGCACGCGCCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTTGAAGCCGCGTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAATCCACA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GTCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGTCCGACACGGGCAGCCGCGCCGTTCAGGCG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB C6S9I0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

96.709

100

0.967

  dprA Neisseria gonorrhoeae strain FA1090

96.456

100

0.965

  dprA Neisseria meningitidis strain C311

89.673

100

0.901

  dprA Neisseria meningitidis MC58

89.673

100

0.901

  dprA Glaesserella parasuis strain SC1401

40.576

96.709

0.392

  dprA Vibrio cholerae strain A1552

37.975

100

0.38


Multiple sequence alignment