Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJD98_RS02980 Genome accession   NZ_CP045974
Coordinates   627321..628832 (-) Length   503 a.a.
NCBI ID   WP_010946327.1    Uniprot ID   Q5ZXZ0
Organism   Legionella pneumophila strain AUSMDU00010536 isolate SBT211     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622321..633832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD98_RS02950 (GJD98_02950) - 622872..623543 (-) 672 WP_010946321.1 TIGR00153 family protein -
  GJD98_RS02955 (GJD98_02955) - 623731..624495 (+) 765 WP_010946322.1 hypothetical protein -
  GJD98_RS02960 (GJD98_02960) - 624798..625361 (+) 564 WP_010946323.1 YqgE/AlgH family protein -
  GJD98_RS02965 (GJD98_02965) ruvX 625354..625773 (+) 420 WP_016356737.1 Holliday junction resolvase RuvX -
  GJD98_RS02970 (GJD98_02970) - 625823..626716 (+) 894 WP_010946325.1 aspartate carbamoyltransferase catalytic subunit -
  GJD98_RS02975 (GJD98_02975) - 626830..627216 (-) 387 WP_010946326.1 hypothetical protein -
  GJD98_RS02980 (GJD98_02980) comM 627321..628832 (-) 1512 WP_010946327.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJD98_RS02985 (GJD98_02985) ubiK 628897..629157 (-) 261 WP_010946328.1 ubiquinone biosynthesis accessory factor UbiK -
  GJD98_RS02990 (GJD98_02990) - 629302..629640 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  GJD98_RS02995 (GJD98_02995) - 629650..630231 (-) 582 WP_010946330.1 5-formyltetrahydrofolate cyclo-ligase -
  GJD98_RS03000 (GJD98_03000) - 630478..630663 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  GJD98_RS03005 (GJD98_03005) - 630677..631492 (+) 816 WP_010946332.1 aminotransferase class IV -
  GJD98_RS03010 (GJD98_03010) - 631519..632202 (-) 684 WP_015444780.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54927.54 Da        Isoelectric Point: 7.9538

>NTDB_id=349044 GJD98_RS02980 WP_010946327.1 627321..628832(-) (comM) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPGFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMSE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=349044 GJD98_RS02980 WP_010946327.1 627321..628832(-) (comM) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
ATGAATCTCGCATTTACCAAAACGCGAAGCACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTACCAGGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGAGTGCGCAGCGCTATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACGGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCGGAACAAATTCCTCTCACCAACCTTGCAAACCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AACATCTGATTATAGCGAATGCAAATGCTGCCGAAGCTTCTTTAACCGGCCATCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGTA
TTCTCCTAAGTGGCGCACCAGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTACCTGAACTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCTTCACCTGTCGCTTTAGTCGGAGGAGGCAACCCGCCGAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTGGAG
TCAGGGCATATTTGCATTTCCAGGGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAGG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAGTGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZXZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

97.217

100

0.972
  comM Legionella pneumophila str. Paris

97.217

100

0.972
  comM Haemophilus influenzae Rd KW20

50.197

100

0.507
  comM Vibrio cholerae strain A1552

50.497

100

0.505
  comM Vibrio cholerae O1 biovar El Tor strain E7946

50.497

100

0.505
  comM Vibrio campbellii strain DS40M4

49.901

100

0.501
  comM Acinetobacter baylyi ADP1

48.996

99.006

0.485
  comM Glaesserella parasuis strain SC1401

47.732

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.369

99.006

0.419