Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SSUBM407_RS04910 Genome accession   NC_012926
Coordinates   1001264..1002106 (+) Length   280 a.a.
NCBI ID   WP_012775129.1    Uniprot ID   -
Organism   Streptococcus suis BM407     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 996264..1007106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS04880 (SSUBM407_0924) trhA 996999..997649 (-) 651 WP_002936498.1 PAQR family membrane homeostasis protein TrhA -
  SSUBM407_RS04885 (SSUBM407_0925) - 997639..998190 (-) 552 WP_011922482.1 DUF1836 domain-containing protein -
  SSUBM407_RS04890 (SSUBM407_0926) - 998298..999950 (-) 1653 WP_012775595.1 FAD-dependent oxidoreductase -
  SSUBM407_RS04895 (SSUBM407_0927) - 999947..1000270 (-) 324 WP_012775130.1 rhodanese-like domain-containing protein -
  SSUBM407_RS04900 (SSUBM407_0928) - 1000377..1000637 (+) 261 WP_009909865.1 metal-sensitive transcriptional regulator -
  SSUBM407_RS04905 (SSUBM407_0929) - 1000648..1001205 (+) 558 WP_011922479.1 sugar O-acetyltransferase -
  SSUBM407_RS04910 (SSUBM407_0930) dprA 1001264..1002106 (+) 843 WP_012775129.1 DNA-processing protein DprA Machinery gene
  SSUBM407_RS04915 (SSUBM407_0931) topA 1002199..1004292 (+) 2094 WP_012775596.1 type I DNA topoisomerase -
  SSUBM407_RS04920 (SSUBM407_0932) rplJ 1004869..1005363 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  SSUBM407_RS04925 (SSUBM407_0933) rplL 1005429..1005794 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  SSUBM407_RS10635 (SSUBM407_0933a) - 1005993..1006166 (+) 174 WP_012775127.1 hypothetical protein -
  SSUBM407_RS04930 (SSUBM407_0934) - 1006163..1006981 (+) 819 WP_011922472.1 replication initiator protein A -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31246.14 Da        Isoelectric Point: 8.4451

>NTDB_id=34674 SSUBM407_RS04910 WP_012775129.1 1001264..1002106(+) (dprA) [Streptococcus suis BM407]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKLKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=34674 SSUBM407_RS04910 WP_012775129.1 1001264..1002106(+) (dprA) [Streptococcus suis BM407]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATTAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGTATCCAATCTGTTCAGAAAATTATCAAGGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGATACAGCTGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATTGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCTGGCAGCTTGATTACTTGTGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATTTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGATTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70

100

0.7
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60

100

0.6
  dprA Legionella pneumophila strain ERS1305867

42.105

88.214

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

50.746

71.786

0.364

Multiple sequence alignment