Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   SAVC_RS05680 Genome accession   NC_016912
Coordinates   1144626..1146686 (+) Length   686 a.a.
NCBI ID   WP_001151499.1    Uniprot ID   A0A0H2XIE8
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1139626..1151686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS05655 (SAVC_05275) rpe 1140097..1140741 (+) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -
  SAVC_RS05660 (SAVC_05280) - 1140748..1141389 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  SAVC_RS05665 (SAVC_05285) rpmB 1141770..1141958 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  SAVC_RS05670 (SAVC_05290) - 1142401..1142775 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  SAVC_RS05675 (SAVC_05295) fakA 1142790..1144436 (+) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  SAVC_RS05680 (SAVC_05300) recG 1144626..1146686 (+) 2061 WP_001151499.1 ATP-dependent DNA helicase RecG Machinery gene
  SAVC_RS05685 (SAVC_05305) fapR 1146889..1147461 (+) 573 WP_001548538.1 transcription factor FapR -
  SAVC_RS05690 (SAVC_05310) plsX 1147466..1148452 (+) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  SAVC_RS05695 (SAVC_05315) fabD 1148445..1149371 (+) 927 WP_000047348.1 ACP S-malonyltransferase -
  SAVC_RS05700 (SAVC_05320) fabG 1149364..1150098 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  SAVC_RS05710 (SAVC_05325) - 1150341..1150574 (+) 234 WP_000426914.1 acyl carrier protein -
  SAVC_RS05715 (SAVC_05330) rnc 1150690..1151421 (+) 732 WP_000043237.1 ribonuclease III -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78342.91 Da        Isoelectric Point: 6.2483

>NTDB_id=34672 SAVC_RS05680 WP_001151499.1 1144626..1146686(+) (recG) [Staphylococcus aureus subsp. aureus VC40]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=34672 SAVC_RS05680 WP_001151499.1 1144626..1146686(+) (recG) [Staphylococcus aureus subsp. aureus VC40]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACTGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTATCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAAATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(267-422)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XIE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

39.97

97.376

0.389

Multiple sequence alignment