Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | SGPB_RS09940 | Genome accession | NC_015600 |
| Coordinates | 2024242..2024835 (-) | Length | 197 a.a. |
| NCBI ID | WP_003066922.1 | Uniprot ID | E0PGF6 |
| Organism | Streptococcus pasteurianus ATCC 43144 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2019242..2029835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGPB_RS09920 (SGPB_1952) | - | 2020845..2021792 (-) | 948 | WP_230321698.1 | MFS transporter | - |
| SGPB_RS09925 (SGPB_1953) | - | 2022385..2022687 (-) | 303 | WP_230321699.1 | hypothetical protein | - |
| SGPB_RS11555 (SGPB_1955) | - | 2022988..2023164 (-) | 177 | WP_230321700.1 | hypothetical protein | - |
| SGPB_RS09935 (SGPB_1956) | - | 2023311..2024162 (+) | 852 | WP_013852329.1 | helix-turn-helix domain-containing protein | - |
| SGPB_RS09940 (SGPB_1957) | ruvA | 2024242..2024835 (-) | 594 | WP_003066922.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| SGPB_RS09945 (SGPB_1958) | hexB | 2024837..2026759 (-) | 1923 | WP_013852330.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| SGPB_RS09950 (SGPB_1959) | hexA | 2026876..2029446 (-) | 2571 | WP_013852331.1 | DNA mismatch repair protein MutS | Machinery gene |
| SGPB_RS09955 (SGPB_1960) | - | 2029433..2029789 (-) | 357 | WP_003066927.1 | YlbF family regulator | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21782.20 Da Isoelectric Point: 5.3568
>NTDB_id=34138 SGPB_RS09940 WP_003066922.1 2024242..2024835(-) (ruvA) [Streptococcus pasteurianus ATCC 43144]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA
Nucleotide
Download Length: 594 bp
>NTDB_id=34138 SGPB_RS09940 WP_003066922.1 2024242..2024835(-) (ruvA) [Streptococcus pasteurianus ATCC 43144]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae R6 |
69.192 |
100 |
0.695 |
| ruvA | Streptococcus pneumoniae D39 |
69.192 |
100 |
0.695 |
| ruvA | Streptococcus pneumoniae TIGR4 |
69.036 |
100 |
0.69 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
41.379 |
100 |
0.426 |