Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ETT66_RS04685 Genome accession   NZ_CP035433
Coordinates   931628..932464 (-) Length   278 a.a.
NCBI ID   WP_136286239.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm65     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 926628..937464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT66_RS04675 (ETT66_04675) trmFO 927911..929257 (-) 1347 WP_002995015.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ETT66_RS04680 (ETT66_04680) topA 929392..931521 (-) 2130 WP_136286240.1 type I DNA topoisomerase -
  ETT66_RS04685 (ETT66_04685) dprA 931628..932464 (-) 837 WP_136286239.1 DNA-processing protein DprA Machinery gene
  ETT66_RS04690 (ETT66_04690) - 932529..933320 (-) 792 WP_023611055.1 ribonuclease HII -
  ETT66_RS04695 (ETT66_04695) ylqF 933310..934158 (-) 849 WP_136271686.1 ribosome biogenesis GTPase YlqF -
  ETT66_RS04700 (ETT66_04700) - 934377..934817 (+) 441 WP_002989774.1 DUF1836 domain-containing protein -
  ETT66_RS04705 (ETT66_04705) - 934814..935464 (+) 651 WP_002984629.1 hemolysin III family protein -
  ETT66_RS04710 (ETT66_04710) - 935581..936492 (+) 912 WP_047235287.1 diacylglycerol kinase family protein -
  ETT66_RS04715 (ETT66_04715) - 936542..936910 (-) 369 WP_010922310.1 hypothetical protein -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 31112.14 Da        Isoelectric Point: 9.4246

>NTDB_id=341330 ETT66_RS04685 WP_136286239.1 931628..932464(-) (dprA) [Streptococcus pyogenes strain emm65]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPREEALSYHFPERNRIIAGLSRGILVVEAKNRSGSFITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=341330 ETT66_RS04685 WP_136286239.1 931628..932464(-) (dprA) [Streptococcus pyogenes strain emm65]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAAA
ACAACAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAAATTAAAAATGGAATTTAAACAATTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCCTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACCATC
GCTATTATTGGAACAGGGTTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAAGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTTATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACATCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

66.906

100

0.669

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

59.712

100

0.597

  dprA/cilB/dalA Streptococcus pneumoniae D39

59.712

100

0.597

  dprA/cilB/dalA Streptococcus pneumoniae R6

59.712

100

0.597

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

59.712

100

0.597

  dprA/cilB/dalA Streptococcus mitis SK321

59.712

100

0.597

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.353

100

0.594

  dprA Lactococcus lactis subsp. cremoris KW2

56.835

100

0.568

  dprA Legionella pneumophila strain ERS1305867

42.437

85.612

0.363


Multiple sequence alignment