Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ETT71_RS04840 Genome accession   NZ_CP035428
Coordinates   927673..928509 (+) Length   278 a.a.
NCBI ID   WP_136093383.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmSTG866.1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 922673..933509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT71_RS09510 (ETT71_04805) - 923029..923595 (+) 567 WP_136288996.1 hypothetical protein -
  ETT71_RS04815 (ETT71_04810) - 923645..924556 (-) 912 WP_002989777.1 diacylglycerol kinase family protein -
  ETT71_RS04820 (ETT71_04815) - 924673..925323 (-) 651 WP_002984629.1 hemolysin III family protein -
  ETT71_RS04825 (ETT71_04820) - 925320..925760 (-) 441 WP_002989774.1 DUF1836 domain-containing protein -
  ETT71_RS04830 (ETT71_04825) ylqF 925979..926827 (+) 849 WP_136093381.1 ribosome biogenesis GTPase YlqF -
  ETT71_RS04835 (ETT71_04830) - 926817..927608 (+) 792 WP_136093382.1 ribonuclease HII -
  ETT71_RS04840 (ETT71_04835) dprA 927673..928509 (+) 837 WP_136093383.1 DNA-processing protein DprA Machinery gene
  ETT71_RS04845 (ETT71_04840) topA 928617..930746 (+) 2130 WP_011017773.1 type I DNA topoisomerase -
  ETT71_RS09200 - 930821..931705 (-) 885 Protein_891 LysR family transcriptional regulator -
  ETT71_RS04860 (ETT71_04855) - 931718..932284 (+) 567 Protein_892 PTS sugar transporter subunit IIC -
  ETT71_RS04865 (ETT71_04860) - 932299..933291 (+) 993 WP_136093384.1 D-lactate dehydrogenase -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 31022.96 Da        Isoelectric Point: 8.8230

>NTDB_id=341062 ETT71_RS04840 WP_136093383.1 927673..928509(+) (dprA) [Streptococcus pyogenes strain emmSTG866.1]
MNHFELYKLKKAGLTNKNILNILDYQEHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVFLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=341062 ETT71_RS04840 WP_136093383.1 927673..928509(+) (dprA) [Streptococcus pyogenes strain emmSTG866.1]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAGA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCCGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAAATTAAAAATGGAATTTAAACAATTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCTTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACTGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAATCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACTATC
GCTATTATTGGAACAGGATTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACATCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

100

0.673

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.432

100

0.604

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.432

100

0.604

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.432

100

0.604

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.432

100

0.604

  dprA/cilB/dalA Streptococcus mitis SK321

60.432

100

0.604

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.072

100

0.601

  dprA Lactococcus lactis subsp. cremoris KW2

57.194

100

0.572

  dprA Legionella pneumophila strain ERS1305867

42.857

85.612

0.367


Multiple sequence alignment