Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ETL58_RS12655 Genome accession   NZ_CP035413
Coordinates   2443357..2443653 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain SRCM103629     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2438357..2448653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS12610 (ETL58_12610) tasA 2438765..2439550 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  ETL58_RS12615 (ETL58_12615) sipW 2439614..2440186 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ETL58_RS12620 (ETL58_12620) tapA 2440170..2440931 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ETL58_RS12625 (ETL58_12625) yqzG 2441203..2441529 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ETL58_RS12630 (ETL58_12630) spoIITA 2441571..2441750 (-) 180 WP_003230176.1 YqzE family protein -
  ETL58_RS12635 (ETL58_12635) comGG 2441821..2442195 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ETL58_RS12640 (ETL58_12640) comGF 2442196..2442579 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  ETL58_RS12645 (ETL58_12645) comGE 2442605..2442952 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ETL58_RS12650 (ETL58_12650) comGD 2442936..2443367 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ETL58_RS12655 (ETL58_12655) comGC 2443357..2443653 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ETL58_RS12660 (ETL58_12660) comGB 2443667..2444704 (-) 1038 WP_101172386.1 comG operon protein ComGB Machinery gene
  ETL58_RS12665 (ETL58_12665) comGA 2444691..2445761 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ETL58_RS12675 (ETL58_12675) corA 2446173..2447126 (-) 954 WP_029317911.1 magnesium transporter CorA -
  ETL58_RS12680 (ETL58_12680) yqhB 2447269..2448597 (+) 1329 WP_041850018.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=340802 ETL58_RS12655 WP_003230162.1 2443357..2443653(-) (comGC) [Bacillus subtilis strain SRCM103629]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=340802 ETL58_RS12655 WP_003230162.1 2443357..2443653(-) (comGC) [Bacillus subtilis strain SRCM103629]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment