Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   F5K02_RS09055 Genome accession   NZ_CP044132
Coordinates   1802399..1802830 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797399..1807830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS09035 (F5K02_09105) spoVS 1797969..1798229 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  F5K02_RS09040 (F5K02_09110) tdh 1798487..1799533 (+) 1047 WP_025284747.1 L-threonine 3-dehydrogenase -
  F5K02_RS09045 (F5K02_09115) - 1799546..1800724 (+) 1179 WP_199022645.1 glycine C-acetyltransferase -
  F5K02_RS09050 (F5K02_09120) miaB 1800867..1802396 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  F5K02_RS09055 (F5K02_09125) ymcA 1802399..1802830 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  F5K02_RS09060 (F5K02_09130) cotE 1803085..1803630 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  F5K02_RS09065 (F5K02_09135) hexA 1803749..1806334 (+) 2586 WP_144664730.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=340798 F5K02_RS09055 WP_003154113.1 1802399..1802830(+) (ymcA) [Bacillus amyloliquefaciens strain ZKY01]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=340798 F5K02_RS09055 WP_003154113.1 1802399..1802830(+) (ymcA) [Bacillus amyloliquefaciens strain ZKY01]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTTAAACGTGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment