Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ETL58_RS12640 Genome accession   NZ_CP035413
Coordinates   2442196..2442579 (-) Length   127 a.a.
NCBI ID   WP_015251713.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2437196..2447579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS12600 (ETL58_12600) sinI 2438130..2438303 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ETL58_RS12605 (ETL58_12605) sinR 2438337..2438672 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ETL58_RS12610 (ETL58_12610) tasA 2438765..2439550 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  ETL58_RS12615 (ETL58_12615) sipW 2439614..2440186 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ETL58_RS12620 (ETL58_12620) tapA 2440170..2440931 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ETL58_RS12625 (ETL58_12625) yqzG 2441203..2441529 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ETL58_RS12630 (ETL58_12630) spoIITA 2441571..2441750 (-) 180 WP_003230176.1 YqzE family protein -
  ETL58_RS12635 (ETL58_12635) comGG 2441821..2442195 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ETL58_RS12640 (ETL58_12640) comGF 2442196..2442579 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  ETL58_RS12645 (ETL58_12645) comGE 2442605..2442952 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ETL58_RS12650 (ETL58_12650) comGD 2442936..2443367 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ETL58_RS12655 (ETL58_12655) comGC 2443357..2443653 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ETL58_RS12660 (ETL58_12660) comGB 2443667..2444704 (-) 1038 WP_101172386.1 comG operon protein ComGB Machinery gene
  ETL58_RS12665 (ETL58_12665) comGA 2444691..2445761 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ETL58_RS12675 (ETL58_12675) corA 2446173..2447126 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14280.43 Da        Isoelectric Point: 6.4838

>NTDB_id=340799 ETL58_RS12640 WP_015251713.1 2442196..2442579(-) (comGF) [Bacillus subtilis strain SRCM103629]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=340799 ETL58_RS12640 WP_015251713.1 2442196..2442579(-) (comGF) [Bacillus subtilis strain SRCM103629]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCGGTCTATTCGTATTTAGGAGGAGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992

Multiple sequence alignment