Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   F3K21_RS02730 Genome accession   NZ_CP043957
Coordinates   596305..596907 (+) Length   200 a.a.
NCBI ID   WP_060879749.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1480     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 591305..601907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS02705 (F3K21_02715) - 591844..592533 (+) 690 WP_013005946.1 DUF3105 domain-containing protein -
  F3K21_RS02710 (F3K21_02720) - 592845..593765 (+) 921 WP_037728782.1 lipoprotein -
  F3K21_RS02715 (F3K21_02725) - 593762..594778 (-) 1017 WP_037728780.1 TerC family protein -
  F3K21_RS02720 (F3K21_02730) - 594935..595414 (-) 480 WP_013005943.1 VOC family protein -
  F3K21_RS02725 (F3K21_02735) - 595649..596305 (+) 657 WP_013005942.1 ATP-dependent Clp protease proteolytic subunit -
  F3K21_RS02730 (F3K21_02740) clpP 596305..596907 (+) 603 WP_060879749.1 ATP-dependent Clp protease proteolytic subunit Regulator
  F3K21_RS02735 (F3K21_02745) - 596987..597406 (-) 420 WP_060879748.1 helix-turn-helix transcriptional regulator -
  F3K21_RS02740 (F3K21_02750) - 597513..598106 (-) 594 WP_037729256.1 DinB family protein -
  F3K21_RS02745 (F3K21_02755) - 598361..599830 (+) 1470 WP_210532987.1 FG-GAP-like repeat-containing protein -
  F3K21_RS02750 (F3K21_02760) - 599864..601183 (-) 1320 WP_013005937.1 DUF6777 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21517.43 Da        Isoelectric Point: 5.0502

>NTDB_id=339851 F3K21_RS02730 WP_060879749.1 596305..596907(+) (clpP) [Streptomyces sp. LBUM 1480]
MGSYTIPNVVERTAQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMSYVRAPVSTFCVGQAASTAAVLLAGGDAGRRFVLEHARVLLGQPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARH
TGRATAELRADMDRDKVFTAQEAVAYGLADEVLNRRLVAV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=339851 F3K21_RS02730 WP_060879749.1 596305..596907(+) (clpP) [Streptomyces sp. LBUM 1480]
ATGGGGAGCTACACGATTCCGAACGTGGTCGAGCGGACCGCGCAGGGCGAGCGGTCGTACGACGTGTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTCCTCGGCACCGAGATCGACGACGGAGTGGCCAACGTCGTCATCGCACAGCTGCTCCACCTGG
AGTCCTCGGCGCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGCGGATCGTTCACTTCACTGATGGCGATCTAC
GACACGATGTCCTACGTGCGCGCGCCGGTCTCGACGTTCTGCGTCGGGCAGGCGGCCTCCACCGCGGCGGTGCTGCTGGC
GGGCGGGGACGCCGGGCGGCGGTTCGTGCTGGAGCACGCGCGGGTGCTGCTGGGGCAGCCGGCCAGCGGGGGCCGTCAGG
GCACGGTCTCCGATCTCGCCCTGCAGGCCAAGGAGATGGTGCGGATCCGGTCCCAGGTCGAGGAGGTGCTCGCGCGTCAC
ACGGGCCGCGCGACCGCGGAACTGCGGGCCGACATGGACCGGGACAAGGTGTTCACGGCTCAGGAGGCGGTGGCCTACGG
GCTGGCGGACGAGGTGTTGAACCGGCGGCTGGTGGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.936

94

0.46
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.368

95

0.45
  clpP Streptococcus pneumoniae D39

40.741

94.5

0.385
  clpP Streptococcus pneumoniae R6

40.741

94.5

0.385
  clpP Streptococcus pneumoniae TIGR4

40.741

94.5

0.385
  clpP Streptococcus pneumoniae Rx1

40.741

94.5

0.385
  clpP Streptococcus pyogenes JRS4

40.212

94.5

0.38
  clpP Streptococcus pyogenes MGAS315

40.212

94.5

0.38
  clpP Streptococcus thermophilus LMG 18311

39.175

97

0.38
  clpP Streptococcus thermophilus LMD-9

39.175

97

0.38
  clpP Streptococcus mutans UA159

39.683

94.5

0.375
  clpP Lactococcus lactis subsp. cremoris KW2

39.267

95.5

0.375

Multiple sequence alignment