Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UMN179_RS04800 Genome accession   NC_015460
Coordinates   1018472..1019137 (+) Length   221 a.a.
NCBI ID   WP_013745760.1    Uniprot ID   -
Organism   Gallibacterium anatis UMN179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013472..1024137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS04765 (UMN179_00939) tsaA 1013526..1014233 (+) 708 WP_013745753.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  UMN179_RS04770 (UMN179_00940) - 1014275..1015030 (-) 756 WP_013745754.1 class I SAM-dependent methyltransferase -
  UMN179_RS04775 (UMN179_00941) crp 1015052..1015708 (-) 657 WP_013745755.1 cAMP-activated global transcriptional regulator CRP Regulator
  UMN179_RS04780 (UMN179_00942) - 1015769..1015996 (-) 228 WP_013745756.1 YheU family protein -
  UMN179_RS04785 (UMN179_00943) slmA 1015999..1016628 (-) 630 WP_013745757.1 nucleoid occlusion factor SlmA -
  UMN179_RS04790 (UMN179_00944) dut 1016603..1017055 (-) 453 WP_013745758.1 dUTP diphosphatase -
  UMN179_RS04795 (UMN179_00945) coaBC 1017042..1018271 (-) 1230 WP_013745759.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  UMN179_RS04800 (UMN179_00946) radC 1018472..1019137 (+) 666 WP_013745760.1 RadC family protein Machinery gene
  UMN179_RS04805 (UMN179_00947) htpG 1019225..1021111 (-) 1887 WP_013745761.1 molecular chaperone HtpG -
  UMN179_RS04810 (UMN179_00948) - 1021331..1021951 (-) 621 WP_013745762.1 opacity family porin -
  UMN179_RS04815 (UMN179_00949) - 1022016..1022522 (-) 507 WP_013745763.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25321.39 Da        Isoelectric Point: 7.4243

>NTDB_id=33977 UMN179_RS04800 WP_013745760.1 1018472..1019137(+) (radC) [Gallibacterium anatis UMN179]
MTELMPREKLLQQGADKLSDQELLAIFLRTGFKNCSVMTLAENSLHHFGSLRELLSASKEKFCEVKGLGVTQYIQLQACI
EMTKRYLAQEIKQQPLFNNIEFAKLYMQTELSHQQRELFVVLFLNNQHYLIEKETLFQGTINSTQVHPREIIKSALKYNA
AAIILAHNHPSGITTPSKEDIAVTEQIQQACKLIDVRVLDHLIIGKNQVFSFCEKGLIDFR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=33977 UMN179_RS04800 WP_013745760.1 1018472..1019137(+) (radC) [Gallibacterium anatis UMN179]
ATGACCGAACTCATGCCGCGTGAAAAACTTTTGCAGCAAGGTGCTGATAAATTAAGCGATCAAGAATTGTTAGCCATTTT
TTTACGCACCGGTTTTAAAAATTGTTCCGTGATGACCTTGGCAGAAAACAGCCTACATCATTTCGGCTCGTTACGTGAAT
TACTGTCAGCATCAAAAGAAAAATTCTGTGAAGTCAAAGGGTTAGGTGTAACACAATATATTCAGTTGCAAGCCTGTATC
GAAATGACCAAACGTTATTTGGCACAAGAAATCAAACAACAGCCCCTGTTTAATAATATTGAGTTTGCCAAACTTTATAT
GCAGACCGAATTATCCCATCAACAAAGAGAGCTTTTTGTTGTGCTTTTTCTGAATAATCAACACTATTTAATTGAAAAAG
AGACGTTATTCCAAGGCACCATTAACAGCACCCAAGTTCATCCACGAGAAATTATTAAATCGGCATTAAAATATAATGCC
GCTGCCATTATTTTGGCTCACAATCACCCTTCCGGCATTACAACGCCCAGTAAAGAAGATATTGCTGTTACCGAACAGAT
CCAACAGGCGTGCAAACTGATTGATGTCAGAGTATTGGATCATTTAATTATTGGCAAAAACCAGGTTTTCTCTTTTTGTG
AAAAAGGCTTAATTGATTTTCGATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-73)

RadC-like JAB domain (RadC)

(101-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

62.5

97.738

0.611
  radC Streptococcus gordonii str. Challis substr. CH1

40.845

96.38

0.394
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

41.232

95.475

0.394
  radC Streptococcus pneumoniae TIGR4

38.967

96.38

0.376
  radC Streptococcus pneumoniae R6

38.498

96.38

0.371
  radC Streptococcus pneumoniae D39

38.498

96.38

0.371

Multiple sequence alignment