Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   UMN179_RS04775 Genome accession   NC_015460
Coordinates   1015052..1015708 (-) Length   218 a.a.
NCBI ID   WP_013745755.1    Uniprot ID   -
Organism   Gallibacterium anatis UMN179     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010052..1020708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS04745 (UMN179_00935) - 1010151..1011476 (+) 1326 WP_013745749.1 hemolysin family protein -
  UMN179_RS04750 (UMN179_00936) - 1011520..1011900 (-) 381 WP_013745750.1 VOC family protein -
  UMN179_RS04755 (UMN179_00937) rraA 1011987..1012481 (-) 495 WP_013745751.1 ribonuclease E activity regulator RraA -
  UMN179_RS04760 (UMN179_00938) - 1012513..1013418 (-) 906 WP_039087542.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  UMN179_RS04765 (UMN179_00939) tsaA 1013526..1014233 (+) 708 WP_013745753.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  UMN179_RS04770 (UMN179_00940) - 1014275..1015030 (-) 756 WP_013745754.1 class I SAM-dependent methyltransferase -
  UMN179_RS04775 (UMN179_00941) crp 1015052..1015708 (-) 657 WP_013745755.1 cAMP-activated global transcriptional regulator CRP Regulator
  UMN179_RS04780 (UMN179_00942) - 1015769..1015996 (-) 228 WP_013745756.1 YheU family protein -
  UMN179_RS04785 (UMN179_00943) slmA 1015999..1016628 (-) 630 WP_013745757.1 nucleoid occlusion factor SlmA -
  UMN179_RS04790 (UMN179_00944) dut 1016603..1017055 (-) 453 WP_013745758.1 dUTP diphosphatase -
  UMN179_RS04795 (UMN179_00945) coaBC 1017042..1018271 (-) 1230 WP_013745759.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  UMN179_RS04800 (UMN179_00946) radC 1018472..1019137 (+) 666 WP_013745760.1 RadC family protein Machinery gene

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24627.44 Da        Isoelectric Point: 6.7520

>NTDB_id=33976 UMN179_RS04775 WP_013745755.1 1015052..1015708(-) (crp) [Gallibacterium anatis UMN179]
MDMKEEAEVQQEEATTDPTLEWFLSHCHIHKYPAKSTLINAGEKAETLYYLIKGSIAVSVKDDEGKEMILSYLSQGDFFG
ELGLFEDVKVRSAWVKAKTTCEVAEISYKKFRQLIQVNPEILMYLTSQLARRLQNTSKQVSNLAFLDVTGRIAQTLLHLA
RMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRILKMLEDQGLISAHGKTIVVYGTR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=33976 UMN179_RS04775 WP_013745755.1 1015052..1015708(-) (crp) [Gallibacterium anatis UMN179]
ATGGATATGAAAGAAGAAGCAGAAGTACAACAGGAAGAGGCGACAACGGATCCTACGTTAGAGTGGTTTTTATCGCATTG
TCATATTCATAAATATCCGGCGAAAAGCACCTTAATTAATGCCGGTGAAAAGGCAGAAACGCTCTATTATTTAATTAAAG
GATCGATTGCGGTTTCAGTCAAAGATGATGAAGGCAAAGAGATGATTTTGTCTTATTTGAGCCAAGGCGATTTTTTTGGC
GAGCTTGGTCTATTTGAAGATGTAAAAGTGCGCAGTGCGTGGGTTAAAGCGAAAACAACTTGCGAAGTGGCTGAAATTTC
TTATAAAAAATTCCGTCAACTGATTCAAGTGAATCCTGAAATTTTAATGTATTTGACCTCACAGTTGGCTCGTCGCTTGC
AAAACACTTCAAAACAGGTGAGTAATTTGGCGTTTCTTGATGTTACCGGTCGTATCGCACAAACATTATTACATTTAGCG
AGAATGCCGGATGCAATGACACATCCGGAAGGGATGCAGATTAAAATTACCCGTCAGGAGATCGGACAGATGGTCGGCTG
TTCGCGCGAAACGGTGGGGCGAATTTTAAAAATGCTGGAAGACCAAGGCTTGATTTCTGCGCACGGTAAAACCATTGTTG
TTTATGGAACCAGATAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(150-214)

Cyclic nucleotide-binding domain (cNMP_binding)

(30-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

83.251

93.119

0.775
  crp Haemophilus influenzae Rd KW20

79.904

95.872

0.766
  crp Acinetobacter baumannii D1279779

46.734

91.284

0.427

Multiple sequence alignment