Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ERO09_RS01000 | Genome accession | NZ_CP035368 |
| Coordinates | 223669..224019 (+) | Length | 116 a.a. |
| NCBI ID | WP_128786857.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain LC_1315_18 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 218669..229019
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ERO09_RS00970 (ERO09_00960) | glmU | 219098..220468 (+) | 1371 | WP_128786852.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
| ERO09_RS00975 (ERO09_00965) | lspA | 220585..221076 (+) | 492 | WP_128786853.1 | signal peptidase II | - |
| ERO09_RS00980 (ERO09_00970) | ispH | 221073..222017 (+) | 945 | WP_128786854.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ERO09_RS00985 (ERO09_00975) | - | 222066..222437 (-) | 372 | WP_049357924.1 | DUF305 domain-containing protein | - |
| ERO09_RS00990 (ERO09_00980) | rdgB | 222569..223168 (+) | 600 | WP_128786855.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ERO09_RS00995 (ERO09_00985) | - | 223207..223524 (+) | 318 | WP_128786856.1 | heavy metal-binding domain-containing protein | - |
| ERO09_RS01000 (ERO09_00990) | comE1/comEA | 223669..224019 (+) | 351 | WP_128786857.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ERO09_RS01005 (ERO09_00995) | focA | 224234..225088 (+) | 855 | WP_128786858.1 | formate transporter FocA | - |
| ERO09_RS01010 (ERO09_01000) | pflB | 225142..227454 (+) | 2313 | WP_172621991.1 | formate C-acetyltransferase | - |
| ERO09_RS01015 (ERO09_01005) | - | 227537..227827 (+) | 291 | WP_128786860.1 | putative quinol monooxygenase | - |
| ERO09_RS01020 (ERO09_01010) | pflA | 227944..228684 (+) | 741 | WP_049357935.1 | pyruvate formate lyase 1-activating protein | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12794.62 Da Isoelectric Point: 8.6056
>NTDB_id=339337 ERO09_RS01000 WP_128786857.1 223669..224019(+) (comE1/comEA) [Haemophilus parainfluenzae strain LC_1315_18]
MKLMKHLFSSLFVATTMLSSQVFAEEQVAEQAQPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIVF
MKLMKHLFSSLFVATTMLSSQVFAEEQVAEQAQPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIVF
Nucleotide
Download Length: 351 bp
>NTDB_id=339337 ERO09_RS01000 WP_128786857.1 223669..224019(+) (comE1/comEA) [Haemophilus parainfluenzae strain LC_1315_18]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCAACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAACA
AGTGGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACTGCATCACAAACGACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGCGCATCAGAAATTCAAAAAGCGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTACAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATAGGTAAAGCAACCTT
AGAGAAAAATCGCGATCGCATCGTGTTTTAA
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCAACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAACA
AGTGGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACTGCATCACAAACGACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGCGCATCAGAAATTCAAAAAGCGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTACAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATAGGTAAAGCAACCTT
AGAGAAAAATCGCGATCGCATCGTGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
66.372 |
97.414 |
0.647 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.14 |
98.276 |
0.552 |
| comEA | Acinetobacter baylyi ADP1 |
38.889 |
100 |
0.422 |
| comEA | Vibrio cholerae C6706 |
41.818 |
94.828 |
0.397 |
| comEA | Vibrio cholerae strain A1552 |
41.818 |
94.828 |
0.397 |