Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ERO09_RS00420 Genome accession   NZ_CP035368
Coordinates   86293..87822 (-) Length   509 a.a.
NCBI ID   WP_128786785.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 81293..92822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS00390 (ERO09_00395) - 82021..82533 (+) 513 WP_128786782.1 competence protein ComB -
  ERO09_RS00395 (ERO09_00400) - 82605..83072 (+) 468 WP_253257859.1 competence protein ComC -
  ERO09_RS00400 (ERO09_00405) - 83072..83455 (+) 384 WP_128786783.1 pilus assembly protein PilP -
  ERO09_RS00405 (ERO09_00410) comE 83457..84842 (+) 1386 WP_128786784.1 type IV pilus secretin PilQ Machinery gene
  ERO09_RS00410 (ERO09_00415) - 84862..85551 (+) 690 WP_049357180.1 ComF family protein -
  ERO09_RS00415 (ERO09_00420) nfuA 85665..86249 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  ERO09_RS00420 (ERO09_00425) comM 86293..87822 (-) 1530 WP_128786785.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ERO09_RS00425 (ERO09_00430) yihA 87952..88566 (-) 615 WP_049357183.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ERO09_RS00430 (ERO09_00435) oppF 88845..89843 (-) 999 WP_014064663.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  ERO09_RS00435 (ERO09_00440) - 89840..90811 (-) 972 WP_128786786.1 ABC transporter ATP-binding protein -
  ERO09_RS00440 (ERO09_00445) oppC 90821..91756 (-) 936 WP_128786787.1 oligopeptide ABC transporter permease OppC -
  ERO09_RS00445 (ERO09_00450) oppB 91766..92686 (-) 921 WP_128786788.1 oligopeptide ABC transporter permease OppB -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55734.10 Da        Isoelectric Point: 9.6293

>NTDB_id=339333 ERO09_RS00420 WP_128786785.1 86293..87822(-) (comM) [Haemophilus parainfluenzae strain LC_1315_18]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALINAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LDVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLSRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
DEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=339333 ERO09_RS00420 WP_128786785.1 86293..87822(-) (comM) [Haemophilus parainfluenzae strain LC_1315_18]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGGGTACAAGCCCCCCTTGTCACCATTGAGGTGCACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGCCTACCTGAAAAAACAGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TAAATGCCCAGTTCAAATATCCGGCCAAACGCATCACCGTTAACCTTGCACCAGCCGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCCGCATCAGATCAACTTGATGGCAGCCGTTTAAAACAGTTTGAATTCGT
AGGTGAGCTCGCATTAACAGGTGAATTACGTGGTGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCGAAAC
GCGCCCCCATTATCGCTTATCAAAATGCTAATGAAGCTTCGCTTGTTTCAGAACAAGAGACTTATTTTGCTAAAAACCTG
TTAGACGTCGTACAATTCTTAAATAATCAAGAAAAATTACCTTTAGCCTCATTACTCGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACCGATATTATTGGTCAACAACATGCTAAACGAGCACTAACGATAGCGGCAGCAG
GTCAGCACAACCTACTCTTTTTAGGGCCACCAGGGACGGGTAAAACCATGTTGGCAAGCCGTCTTACTGCATTGCTACCT
GAAATGACCGATTTAGAAGCCATTGAAACCGCTTCGGTTACGAGCTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCGCCACATCATAGTGCCTCATTACCGGCCTTAGTAGGTGGGGGAACCATTCCAAAACCAGGCG
AAATATCACTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTGCTTGATGCACTTCGA
CAGCCCTTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCAAAAATCCAATTCCCCGCTCGCTTTCAACTCGTTGC
CGCGATGAATCCAAGTCCAACCGGGCATTATACGGGAACACATAATCGCACCTCGCCGCAGCAAGTGATGCGTTATTTAA
GCCGACTTTCAGGGCCATTTTTAGATCGCTTTGATTTATCTATTGAAGTACCTCTTCTGCCACAAGGTAGCTTACAGAAT
ACAGGGGATAGAGGTGAGACAAGCCAGCAAGTACGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCCCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGGGATTGTAAATTACAAGATAAAGACTCGCTATTCCTTGAGA
ATGCACTCAATAAGCTAGGACTTTCAGTAAGAGCCTATCATCGGATTTTAAAAGTCTCACGCACGATTGCTGATTTAAAT
GACGAAAAAGAAATACAGCAACCCCATTTAGCTGAAGCGCTCGGATATCGAGCCATGGATCGATTGCTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.913

99.607

0.916
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

65.422

100

0.654
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment