Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F1745_RS14825 Genome accession   NZ_CP043825
Coordinates   2963967..2964482 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM8082     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958967..2969482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1745_RS14805 (F1745_14870) emrA 2959117..2960289 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F1745_RS14810 (F1745_14875) emrB 2960306..2961844 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F1745_RS14815 (F1745_14880) - 2962102..2962809 (+) 708 WP_001097116.1 RNA ligase family protein -
  F1745_RS14820 (F1745_14885) - 2962806..2963918 (+) 1113 WP_000638145.1 ATP-binding protein -
  F1745_RS14825 (F1745_14890) luxS 2963967..2964482 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  F1745_RS14830 (F1745_14895) gshA 2964632..2966188 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  F1745_RS14835 (F1745_14900) yqaA 2966261..2966689 (-) 429 WP_001287457.1 YqaA family protein -
  F1745_RS14840 (F1745_14905) yqaB 2966686..2967252 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F1745_RS14870 (F1745_14935) csrA 2968710..2968895 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=338994 F1745_RS14825 WP_001130211.1 2963967..2964482(-) (luxS) [Escherichia coli strain RM8082]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=338994 F1745_RS14825 WP_001130211.1 2963967..2964482(-) (luxS) [Escherichia coli strain RM8082]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment